Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G063900.1 | Wheat | cytosol | 62.94 | 83.59 |
| TraesCS5B01G068600.1 | Wheat | cytosol | 62.77 | 83.56 |
| TraesCS5D01G074900.1 | Wheat | cytosol | 62.27 | 82.89 |
| Zm00001d041381_P001 | Maize | cytosol, mitochondrion | 53.26 | 67.58 |
| OQU79483 | Sorghum | cytosol, mitochondrion, nucleus | 55.76 | 65.88 |
| HORVU5Hr1G017260.1 | Barley | plastid | 49.92 | 56.42 |
| GSMUA_Achr7P08190_001 | Banana | cytosol | 30.05 | 54.55 |
| GSMUA_Achr9P26470_001 | Banana | nucleus | 35.56 | 51.45 |
| GSMUA_Achr9P09670_001 | Banana | plastid | 30.22 | 49.18 |
| Os03t0625300-00 | Rice | mitochondrion | 42.74 | 48.76 |
| GSMUA_Achr2P17180_001 | Banana | golgi | 37.06 | 47.33 |
| GSMUA_Achr6P34640_001 | Banana | plastid | 30.38 | 46.31 |
| Os03t0738700-01 | Rice | plasma membrane | 37.4 | 45.81 |
| Os01t0946100-02 | Rice | cytosol, plastid | 24.87 | 34.57 |
| Os06t0238700-00 | Rice | cytosol, nucleus, peroxisome, plastid | 22.54 | 33.83 |
| Os02t0740900-01 | Rice | plastid | 21.87 | 32.19 |
| Os01t0232200-00 | Rice | cytosol | 25.21 | 28.76 |
| Os04t0481600-00 | Rice | cytosol | 21.7 | 25.15 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A0P0YBW3 | ProteinID:BAT17899.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlantsGene:Os12g0594000 | EnsemblPlants:Os12t0594000-00 | PFAM:PF00400 | PRINTS:PR00320 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF323 | SMART:SM00320 | SUPFAM:SSF50978 |
| TMHMM:TMhelix | UniParc:UPI0003939FE8 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
OsWD40-198WD40 repeat-like domain containing protein. (Os12t0594000-00)
Coordinates
chr12:+:24915108..24917305
Molecular Weight (calculated)
64599.6 Da
IEP (calculated)
10.044
GRAVY (calculated)
-0.208
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYSYTKDNK NGRVPLPLSD QVELSALQEH DTVGPTTSPN SPFQEIIHCT APTSIRRHVS HHRILRLFPE KKPRASPTVH LSQPPPLYIP LLLSSTHLSV
101: YFQSFDEFFL PSLPLPLVFF FFFFYFYEVI DQLRMGNHKK LLQFLRPADT AVAAARLSDD DDDGGAPSSV PPSPMSTWSG RTSAAASPSP YVMSPWVNLP
201: GFGVGGGDEM VAGGGGTGLL GSLVKEDGHV YSLAAAGELL YTGTDSKNVR VWRHRREFAG FRSGSGLVKA IVVAGDGRIY TGHQDGKVRV WRASADDPAV
301: HRRVGSLPGL GDVLRSAVRP SRYVETRRRH SALWLRHFDA VSCLSLDAAA GLLYSGSWDK TFKVWRVSDS RCLESVRAHD DAVNTVAAAG FDALVFTGSA
401: DGAVKVWRRE PGKGGATRHA MERVLRKGES AVTAIAVAAE ARVVYVGSSD GAVTHWQWRR GGAGVAGPPR NGGALRGHRM AVLCLAVAGR VVVSGSADRT
501: ISVWRREEGA DHARLAVLAG HTGPVKCVAM DEEDDTAGDK RWVVYSGSLD GSVKVWRVSS TPDAAAARTP AHGWKATPSP LGAWTPYAAT PARKRMAAA
101: YFQSFDEFFL PSLPLPLVFF FFFFYFYEVI DQLRMGNHKK LLQFLRPADT AVAAARLSDD DDDGGAPSSV PPSPMSTWSG RTSAAASPSP YVMSPWVNLP
201: GFGVGGGDEM VAGGGGTGLL GSLVKEDGHV YSLAAAGELL YTGTDSKNVR VWRHRREFAG FRSGSGLVKA IVVAGDGRIY TGHQDGKVRV WRASADDPAV
301: HRRVGSLPGL GDVLRSAVRP SRYVETRRRH SALWLRHFDA VSCLSLDAAA GLLYSGSWDK TFKVWRVSDS RCLESVRAHD DAVNTVAAAG FDALVFTGSA
401: DGAVKVWRRE PGKGGATRHA MERVLRKGES AVTAIAVAAE ARVVYVGSSD GAVTHWQWRR GGAGVAGPPR NGGALRGHRM AVLCLAVAGR VVVSGSADRT
501: ISVWRREEGA DHARLAVLAG HTGPVKCVAM DEEDDTAGDK RWVVYSGSLD GSVKVWRVSS TPDAAAARTP AHGWKATPSP LGAWTPYAAT PARKRMAAA
001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG
Arabidopsis Description
En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.