Factsheet for Os01t0946100-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34097	Sorghum	plastid	75.64	74.43
TraesCS3D01G480400.1	Wheat	plastid	71.0	71.5
TraesCS3A01G485100.1	Wheat	plastid	68.45	70.91
Zm00001d042132_P001	Maize	plastid	66.13	70.9
TraesCS3B01G532800.1	Wheat	cytosol, plastid	70.3	70.14
HORVU3Hr1G106030.1	Barley	plastid	69.61	68.81
GSMUA_Achr11P...	Banana	cytosol	48.72	56.45
VIT_13s0019g01680.t01	Wine grape	plastid	51.04	55.42
AT3G51930.1	Thale cress	cytosol, plastid	52.67	54.7
KRH39863	Soybean	cytosol, plastid	51.74	53.61
CDY23176	Canola	cytosol, plastid	52.44	53.3
CDX78047	Canola	plastid	51.51	53.11
Bra033466.1-P	Field mustard	cytosol, plastid	52.2	53.07
PGSC0003DMT400017340	Potato	plastid	50.35	52.8
Bra006883.1-P	Field mustard	plastid	51.28	52.12
CDX73675	Canola	cytosol, mitochondrion, plastid	51.28	52.12
Solyc01g068250.2.1	Tomato	cytosol	49.65	51.44
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	29.0	31.33
Os02t0740900-01	Rice	plastid	28.54	30.22
Os03t0738700-01	Rice	plasma membrane	32.25	28.43
Os03t0625300-00	Rice	mitochondrion	30.39	24.95
Os12t0594000-00	Rice	cytosol, peroxisome, plastid	34.57	24.87
Os04t0481600-00	Rice	cytosol	29.23	24.37
Os01t0232200-00	Rice	cytosol	27.61	22.67

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4325827	ProteinID:BAB63864.1	ProteinID:BAF07295.1	ProteinID:BAS76197.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os01g0946100	EnsemblPlants:Os01t0946100-02	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF223	UniProt:Q94CQ0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00000A07E1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015641852.1	SEG:seg	:

Description

OsWD40-31WD40 repeat-like domain containing protein. (Os01t0946100-02)

Coordinates

chr1:+:41582224..41583931

Molecular Weight (calculated)

46476.8 Da

IEP (calculated)

9.327

GRAVY (calculated)

-0.145

Length

431 amino acids

Sequence
(BLAST)

001: MAMPLRDPTD RAAMSAPLLP RSAFVSSASF SSFSSVASFS STSSSFSDPA VPSDVVEALP MSRDSFKALA VLRDHQGSVS SLSLCGEFLL SASTGADIVA
101: WQQPDLRRFA RFGHGEGSVK ALAAAGGRVF SAHQDGRVRV WRVSRRSENA FKLVAALPTT RDYLGKIFRH ASYVQTRRNH RRLWIEHADS ISCLAVHDGV
201: VYSGSWDKTL KVWRISDLKC LESIHAHDDA INAVAADSGT IYSASADGHV KAWGKGKAAH FLQGILISRD GVSWNALVAS ADAGARRVYA AGSDGHVVGW
301: DRVGGRGSRW SLSCDVKAHD MAVLCLCVAG DLVFTGSADK TIGLWRWQTS GDGDGAAAAA LARVGVIRGH EGPVKCIQAS WCRVSNGCMV YSGGLDKSIR
401: VWWVPNGWKA NEQKQQQEND TKDHKNCVFL R

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.