Factsheet for Solyc01g068250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017340	Potato	plastid	91.59	92.7
VIT_13s0019g01680.t01	Wine grape	plastid	69.47	72.8
KRH39863	Soybean	cytosol, plastid	69.71	69.71
CDX78047	Canola	plastid	66.11	65.79
AT3G51930.1	Thale cress	cytosol, plastid	65.38	65.54
Bra006883.1-P	Field mustard	plastid	65.87	64.62
CDX73675	Canola	cytosol, mitochondrion, plastid	65.62	64.39
CDY23176	Canola	cytosol, plastid	64.66	63.44
Bra033466.1-P	Field mustard	cytosol, plastid	64.18	62.97
GSMUA_Achr11P...	Banana	cytosol	56.01	62.63
TraesCS3A01G485100.1	Wheat	plastid	50.48	50.48
Os01t0946100-02	Rice	cytosol, plastid	51.44	49.65
TraesCS3D01G480400.1	Wheat	plastid	50.96	49.53
TraesCS3B01G532800.1	Wheat	cytosol, plastid	50.72	48.84
KXG34097	Sorghum	plastid	50.96	48.4
HORVU3Hr1G106030.1	Barley	plastid	50.72	48.39
Zm00001d042132_P001	Maize	plastid	44.47	46.02
Solyc12g088980.1.1	Tomato	cytosol	34.38	35.22
Solyc03g111780.1.1	Tomato	cytosol	32.21	33.42
Solyc05g006340.2.1	Tomato	cytosol	32.21	32.29
Solyc07g025140.2.1	Tomato	cytosol	33.65	31.67
Solyc02g090150.1.1	Tomato	nucleus	34.38	31.64
Solyc04g005020.2.1	Tomato	plastid	32.45	31.47
Solyc04g079700.2.1	Tomato	cytosol	33.17	31.08
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	34.13	30.54
Solyc03g044830.2.1	Tomato	nucleus	33.17	30.2
Solyc05g013880.1.1	Tomato	cytosol, plastid	30.77	30.12
Solyc03g113850.1.1	Tomato	cytosol, plastid	31.25	27.43
Solyc12g044320.1.1	Tomato	cytosol, plastid	25.96	23.84

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4AX72	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF223	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc01g068250.2	EnsemblPlants:Solyc01g068250.2.1
UniParc:UPI000276355F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr1:-:77369470..77370843

Molecular Weight (calculated)

45770.8 Da

IEP (calculated)

8.999

GRAVY (calculated)

-0.175

Length

416 amino acids

Sequence
(BLAST)

001: MLQSKPKSFP LSSMASPPYT TPLLSESSNS IISTTSSESD ESPQTSQRFQ DFQLKISTTP ISCFRSYKSL AVLSGHVGTV SCLALCGEFI LSASQGKDII
101: VWQQPDLRQF TKFGTGDGSV KALITIGNKV FTAHQDSRIR VWKVSRRSEN VFRLIDTLPT TKDYLGKFMK QSNYVQTRRH HKKLWIEHAD SISCLAVSNG
201: YIYSGSWDKT LKVWRISDLK CLESIKAHDD AINGLVASKK NGVVYSASAD GKIKAWKNIC GTHSLKGILE GHKDVSLNSV VVCEDGVFVY GGGSDGYVVG
301: WVGNKNLDSW RLICEVKAHE MAVLCMCLMV GEYLCSGSAD KSICIWKREI NGGLFKFGVI KGHEGPVKCL QASTNSVGGG FMLYSGSLDK SLRVWWIPKY
401: GGVDSDEKKD SSFITN

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.