Factsheet for Solyc03g111780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57169	Soybean	cytosol, plasma membrane	45.14	53.08
KRH03884	Soybean	cytosol	45.64	48.67
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	46.88	47.0
Solyc05g013880.1.1	Tomato	cytosol, plastid	43.64	41.18
Solyc05g006340.2.1	Tomato	cytosol	40.4	39.04
GSMUA_Achr9P07610_001	Banana	nucleus	37.66	37.1
Solyc04g005020.2.1	Tomato	plastid	37.16	34.73
GSMUA_Achr3P17140_001	Banana	cytosol	38.15	34.46
Solyc01g068250.2.1	Tomato	cytosol	33.42	32.21
Solyc03g113850.1.1	Tomato	cytosol, plastid	37.41	31.65
GSMUA_Achr8P28630_001	Banana	cytosol	38.4	29.96
Solyc12g088980.1.1	Tomato	cytosol	30.17	29.8
Solyc04g079700.2.1	Tomato	cytosol	31.92	28.83
TraesCS2D01G338900.1	Wheat	plastid	31.67	28.73
TraesCS2A01G324000.1	Wheat	plastid	31.42	28.44
TraesCS2B01G358100.1	Wheat	plastid	31.67	28.41
Solyc07g025140.2.1	Tomato	cytosol	30.92	28.05
Zm00001d003272_P001	Maize	cytosol, plastid	31.42	27.94
Zm00001d025699_P001	Maize	plastid	31.42	27.88
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	31.17	27.84
KXG26570	Sorghum	cytosol, plastid	32.42	27.6
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	30.92	26.67
Solyc03g044830.2.1	Tomato	nucleus	29.93	26.26
Solyc02g090150.1.1	Tomato	nucleus	28.43	25.22
Os04t0481600-00	Rice	cytosol	32.42	25.15
Solyc12g044320.1.1	Tomato	cytosol, plastid	26.18	23.18

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BK40	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF324	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc03g111780.1	EnsemblPlants:Solyc03g111780.1.1	UniParc:UPI00027690F0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:62413730..62414935

Molecular Weight (calculated)

45075.6 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.249

Length

401 amino acids

Sequence
(BLAST)

001: MEVMSTWFCN NSHYYEDSNS EKQSTTSTTY EENTSSNSSI DDTFVNISPN SCNCIIATFK TLTPQISNLA IHNNILYAAS LNKIVAIDLK TCDFIDTFTS
101: SSFGLVKSIA FAKSKIVTAH QDCKIRIWQF KPSSKNQHHH LFSTLPTLKD RILRGILPKN YVQIRRHKQK LWIQHADTVS GLAVNDGLMY SVSWDKTLKI
201: WKMSDFSCLE SVLGHVDAIN AVVVSQNGIV YTASADGEIK VWRREKNKHI LVTTLRKHKS SVNAMSLNND GTILFSGGCD EKIVVWEKKE HSVDYMLAKW
301: LLKGHNGAIL CLIYLNDVLI SGSSDRSVRI WEKNSINNNE CGYFCSIVLE GHCKPVKSIT AAWDEDENGD NNNNNGIMSV FSGSLDGEIR VWKVNIVSTS
401: R

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.