Factsheet for Zm00001d003272_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26570	Sorghum	cytosol, plastid	86.7	83.01
Zm00001d025699_P001	Maize	plastid	82.71	82.52
TraesCS2D01G338900.1	Wheat	plastid	72.73	74.21
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	72.73	73.05
TraesCS2A01G324000.1	Wheat	plastid	71.4	72.69
TraesCS2B01G358100.1	Wheat	plastid	71.4	72.04
Os04t0481600-00	Rice	cytosol	75.61	65.96
Bra032795.1-P	Field mustard	cytosol	33.04	48.22
GSMUA_Achr9P07610_001	Banana	nucleus	43.24	47.91
GSMUA_Achr3P17140_001	Banana	cytosol	44.12	44.82
Zm00001d017994_P001	Maize	cytosol	33.92	42.98
KRH57169	Soybean	cytosol, plasma membrane	30.82	40.76
CDY03879	Canola	cytosol, mitochondrion	37.03	39.95
CDY51591	Canola	cytosol, mitochondrion	37.03	39.95
KRH43090	Soybean	plastid	38.14	39.91
Bra012504.1-P	Field mustard	cytosol, mitochondrion	36.81	39.71
CDY36134	Canola	plastid	37.03	39.57
Bra010967.1-P	Field mustard	cytosol, plastid	36.81	39.34
CDY24427	Canola	plastid	36.81	39.34
GSMUA_Achr8P28630_001	Banana	cytosol	44.79	39.3
CDX84954	Canola	plastid	36.59	39.1
VIT_01s0137g00360.t01	Wine grape	cytosol	37.25	38.89
AT1G24530.1	Thale cress	cytosol, plastid	35.92	38.76
CDY27587	Canola	plastid	36.36	37.7
Solyc05g013880.1.1	Tomato	cytosol, plastid	34.81	36.94
PGSC0003DMT400043704	Potato	plastid	34.59	35.78
VIT_17s0000g09730.t01	Wine grape	cytosol, plastid	31.71	35.75
KRH03884	Soybean	cytosol	29.71	35.64
Solyc03g111780.1.1	Tomato	cytosol	27.94	31.42
Zm00001d042132_P001	Maize	plastid	26.39	29.6
Zm00001d033304_P001	Maize	mitochondrion, plastid	30.38	28.48
Zm00001d041381_P001	Maize	cytosol, mitochondrion	28.6	27.33
Zm00001d039292_P001	Maize	cytosol	23.5	19.85
Zm00001d009003_P001	Maize	cytosol	22.84	19.81

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6E8A7	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM16653.1	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF199	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00084490C7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d003272	EnsemblPlants:Zm00001d003272_P001	EnsemblPlants:Zm00001d003272_T001	SEG:seg	:	:

Description

Nucleotide binding protein

Coordinates

chr2:+:38446414..38447769

Molecular Weight (calculated)

46152.2 Da

IEP (calculated)

10.732

GRAVY (calculated)

-0.014

Length

451 amino acids

Sequence
(BLAST)

001: MANGTGDGDG KGNANSSKLA TAVSSSSSTV STTSSAATAA AVSEASSSTT SLPSLSSATG GSVTASLVHV TTLLPPSAPS AAAAVAAAGD SPHGLVVARP
101: ACVAFHDLST LEATSTSDAA DGAAAAGSVK CVTHLPGGGG TAAVTGHQDG RLRLWRASSR SRARLRLAAA LPTVSDRLRR FPVPSNHVAV RRHHRRLWIE
201: HADAVAGVAA SADGRLLFSV SWDRTLKVWA VPSLRCLQSL AAHDDAVNAV AVAPDGTVYT ASADKRVRVW APDNKPPSRR AARGKRHQQQ PVYHLVATLS
301: RHTAAVNALA VGCGGQALYS GGNDRSVLVW EREDSASHMV AIGALRGHRK AVLSVACAPG GLVVSGSADQ TVRAWRRAAD GRGYACVAVI DGHHTAVRSV
401: AAAPVPIQLK RSRAAGGVDG GDEEWRVCSA SFDGEVRVWS LRVSGLFGAI F

Best Arabidopsis Sequence Match ( AT1G24530.1 )
(BLAST)

001: MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS
101: GHEVSIYDRD MCAHLDTFNG QDPFSGTVKS VGFSGEKIFT AHQDGKIGVW KLTAKSGYKQ LTTLPTLNDR LRRFALPKNY VQVRRHKKRL WIEHADAVTA
201: LAVSDGFIYS VSWDKTLKIW RASDLRCKES IKAHDDAVNA IAVSTNGTVY TGSADRRIRV WAKPTGEKRH TLVATLEKHK SAVNALALND DGSVLFSGSC
301: DRSILVWERE DTSNYMAVRG ALRGHDKAIL SLFNVSDLLL SGSADRTVRI WRRGPDSSYS CLEVLSGHTK PVKSLAAVRE KELDDVVSII SGSLDGEVKC
401: WKVSVTKPDN SFYTNLVQ

Arabidopsis Description

F21J9.19 [Source:UniProtKB/TrEMBL;Acc:Q9FYL1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.