Factsheet for Zm00001d042132_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34097	Sorghum	plastid	84.33	77.4
Os01t0946100-02	Rice	cytosol, plastid	70.9	66.13
TraesCS3D01G480400.1	Wheat	plastid	67.16	63.08
TraesCS3A01G485100.1	Wheat	plastid	65.17	62.98
TraesCS3B01G532800.1	Wheat	cytosol, plastid	66.92	62.27
HORVU3Hr1G106030.1	Barley	plastid	66.67	61.47
GSMUA_Achr11P...	Banana	cytosol	45.27	48.92
VIT_13s0019g01680.t01	Wine grape	plastid	46.27	46.85
AT3G51930.1	Thale cress	cytosol, plastid	47.51	46.02
KRH39863	Soybean	cytosol, plastid	47.26	45.67
PGSC0003DMT400017340	Potato	plastid	46.52	45.5
CDX78047	Canola	plastid	47.26	45.45
CDY23176	Canola	cytosol, plastid	47.26	44.81
Bra006883.1-P	Field mustard	plastid	47.01	44.58
Solyc01g068250.2.1	Tomato	cytosol	46.02	44.47
CDX73675	Canola	cytosol, mitochondrion, plastid	46.77	44.34
Bra033466.1-P	Field mustard	cytosol, plastid	46.77	44.34
Zm00001d017994_P001	Maize	cytosol	25.37	28.65
Zm00001d041381_P001	Maize	cytosol, mitochondrion	33.33	28.39
Zm00001d033304_P001	Maize	mitochondrion, plastid	32.09	26.82
Zm00001d003272_P001	Maize	cytosol, plastid	29.6	26.39
Zm00001d025699_P001	Maize	plastid	29.6	26.33
Zm00001d009003_P001	Maize	cytosol	26.87	20.77
Zm00001d039292_P001	Maize	cytosol	26.12	19.66

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6N1K5	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM34602.1	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF223	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000842B541	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d042132	EnsemblPlants:Zm00001d042132_P001	EnsemblPlants:Zm00001d042132_T001	SEG:seg	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr3:-:152615685..152616893

Molecular Weight (calculated)

43270.1 Da

IEP (calculated)

9.075

GRAVY (calculated)

-0.170

Length

402 amino acids

Sequence
(BLAST)

001: MAMPDADRNA MSAPLLPRPA CLTASFSSSS SSSSSFASFS SSNSSDPSPP SAFPPAGPCK ALAVLRDHAG SVSSLSLCGE FLLSASTAGD VVAWQQPDLR
101: RFARFGHGGR SENAFKLVAA LPTARDYLGR VFRQDSYVQT TATTAARRAH HRRLWIEHAD SISCLAVAVH DAALLYSGSW DRTLKVWRVA DLRCLESIRA
201: HDDAVNAVAA DAGIVYSASA DGRVKAWEKG KASHFLQGVL VARDGVSWNA LAVAADDRRL YAAGSDGHVA AWDRLGGRTA ARWTLACDVR AHDAAVLCLC
301: VARDLLCTGS ADKTIGLWRR QSAGELAKVG VVRGHEGPVK CIQASWCRLT NGCMVYSGSL DKTIRVWWVP GALQHANDKE QQQQQQKDGF KDHKHKASLF
401: LR

Best Arabidopsis Sequence Match ( AT3G51930.1 )
(BLAST)

001: MVRSIQEGVL MSSSSSSTTS NSNDSDGSLS PSASTKSFVL NTLRPPITGA YKPLAVLSAH VGSVSSLALC GEFLLSASQG KDIIVWQQPD LKIFAKFGQG
101: DGSVKALVSV GSKVFTAHQD SRIRVWKVSR RNSENAFRLV DTLPTTKDYL GKFMKQSNYV QTRRNHKRLW IEHADSISCL AVHAGIIYSG SWDKTLKVWR
201: LSDLKCLESI KAHDDAINGL VAGDGRVYSA SADGKVKIWG KEKRKQIEST SSSSSSLHVL KATLEGRAEV SVNSVVVSGD GNWVYGGGSD GFVIGWEKKE
301: KEGDFEEWRL GFETRGHNMA VLCMCVVGEM VCSGSADKSI GLWRREVTGM LCKFGVIHGH EGPVKCLQAS PNNVGAGFML YSGGLDKSLR VWWVPKQDNL
401: EEKKSSFKTL LTQKE

Arabidopsis Description

At3g51930 [Source:UniProtKB/TrEMBL;Acc:Q9SV11]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.