Factsheet for Solyc12g044320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068048	Potato	cytosol, plastid	97.57	97.57
KRH23424	Soybean	plastid	59.16	60.77
KRH09907	Soybean	cytosol, plastid	32.89	57.09
VIT_09s0002g04060.t01	Wine grape	nucleus	71.3	34.04
Solyc12g088980.1.1	Tomato	cytosol	27.15	30.3
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	30.24	29.46
Solyc04g079700.2.1	Tomato	cytosol	28.48	29.05
Solyc02g090150.1.1	Tomato	nucleus	28.48	28.54
Solyc03g044830.2.1	Tomato	nucleus	28.7	28.45
Solyc05g006340.2.1	Tomato	cytosol	26.05	28.43
Solyc07g025140.2.1	Tomato	cytosol	27.59	28.28
Solyc05g013880.1.1	Tomato	cytosol, plastid	26.27	28.0
Solyc04g005020.2.1	Tomato	plastid	25.39	26.81
Solyc03g111780.1.1	Tomato	cytosol	23.18	26.18
Solyc01g068250.2.1	Tomato	cytosol	23.84	25.96
Solyc03g113850.1.1	Tomato	cytosol, plastid	25.61	24.47

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4DFC0	PFAM:PF00400
PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc12g044320.1	EnsemblPlants:Solyc12g044320.1.1	UniParc:UPI00027695B5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:38640041..38642672

Molecular Weight (calculated)

49935.2 Da

IEP (calculated)

8.169

GRAVY (calculated)

-0.256

Length

453 amino acids

Sequence
(BLAST)

001: MASPIDLEPP NSLSSSAPSF AIRPNNNNNN HNNSFLRSIS TKEPLNFSEQ LAYTPPRIST SALPSNTYSQ PSTPRLSFTL NNPSTKSVDG DDHPDFHQTS
101: YRCISSVLKK DGQILSVAVS NGLVYTGSQA NLIRVWKLPE FTECDHLKTR ASSMVVSLQV SNDMIYAAYG DCKIRVWRRT WEGVIKHVRV ATIPKVGSYV
201: RSYISGRDKM MKHMGPISSL AINISDDILY SASLDKTVKV WRISDLKCIE TIQAHNDPIN DIVVGDDGVL YTASDDATVR VWRRNFCSGD RPHSLTVTLP
301: AKCSPVKTLA LTSDGGVLYG GCSDGYIHYW LKGWFSGQLQ YGGALLGHTH AVMCLASMAN YVVSGSADST CRVWFREQQD CQHVCVAILQ GHRGPIRCVA
401: AFPRLVNEEN EDGCTVCTGS LDGVIKMWRV RRTSISDKGK GSSQNACEYF EIA

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.