CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23424	Soybean	plastid	92.34	54.65
PGSC0003DMT400068048	Potato	cytosol, plastid	57.47	33.11
Solyc12g044320.1.1	Tomato	cytosol, plastid	57.09	32.89
KRH62060	Soybean	cytosol	31.03	19.52
KRH52729	Soybean	cytosol	31.03	17.72
VIT_09s0002g04060.t01	Wine grape	nucleus	63.22	17.39
KRH57017	Soybean	plastid	22.22	14.72
KRH05757	Soybean	nucleus	24.9	13.95
KRH76925	Soybean	nucleus	24.52	13.91
KRH03365	Soybean	nucleus, plastid	21.46	13.79
KRH28540	Soybean	nucleus	24.14	13.76
KRH63468	Soybean	plastid	21.84	13.64
KRH03884	Soybean	cytosol	19.54	13.56
KRH54449	Soybean	plastid	21.84	13.54
KRH57169	Soybean	cytosol, plasma membrane	17.62	13.49
KRH74694	Soybean	nucleus	21.84	13.16
KRH39863	Soybean	cytosol, plastid	20.69	12.98
KRH69465	Soybean	nucleus	21.46	12.76
KRH15278	Soybean	cytosol	17.62	12.64
KRH43090	Soybean	plastid	20.69	12.53
KRH24543	Soybean	cytosol, nucleus	20.31	7.02

Protein Annotations

EntrezGene:100783940	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02009113	EnsemblPlantsGene:GLYMA_15G017700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7M913
EnsemblPlants:KRH09907	ProteinID:KRH09907	ProteinID:KRH09907.1	PFAM:PF11715	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF188	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023D2377	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:1375294..1376700

Molecular Weight (calculated)

28817.2 Da

IEP (calculated)

9.391

GRAVY (calculated)

-0.336

Length

261 amino acids

Sequence
(BLAST)

001: MDDSNSPDPT ASFAFRSTTT TTTPQSNFLR SHSTKETPFS NFIHSPPRLS CPTLSRSLQN SPISSPLHHR QFSPPPSPPS PTKLSDSEPQ TTYHCASSVL
101: RNDGQILSIA LSSNGLVYTG SDSNLVRVWK LPEFTECGQL RTKACRVVAL EVSNDTVYAA YGDGKIRVWR RTWDKVLKHV RLATIPKTLG YVRSYIAGKD
201: KTMHKGLITA MAINTAEDIL YTASLDKTVK VWRISDLKCI ETIKAHTEPI NAIIVADDGV L

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.