CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28540	Soybean	nucleus	91.96	92.36
PGSC0003DMT400026153	Potato	nucleus	56.96	56.96
Solyc02g090150.1.1	Tomato	nucleus	55.87	56.86
VIT_07s0255g00110.t01	Wine grape	nucleus	60.0	55.42
KRH15278	Soybean	cytosol	42.83	54.12
Solyc03g044830.2.1	Tomato	nucleus	53.7	54.05
PGSC0003DMT400059001	Potato	extracellular	53.91	54.03
KRH05757	Soybean	nucleus	54.13	53.43
CDY02088	Canola	cytosol, mitochondrion, nucleus	51.52	52.2
CDY23013	Canola	cytosol	51.3	51.87
Bra036080.1-P	Field mustard	cytosol	51.74	51.63
CDY17780	Canola	cytosol	51.52	51.41
CDY52834	Canola	cytosol	51.52	51.3
AT3G50390.1	Thale cress	cytosol	52.17	51.17
Bra012903.1-P	Field mustard	cytosol	51.52	51.08
KRH57169	Soybean	cytosol, plasma membrane	27.17	36.66
KRH39863	Soybean	cytosol, plastid	31.3	34.62
KRH57017	Soybean	plastid	29.57	34.52
KRH74694	Soybean	nucleus	32.17	34.18
KRH63468	Soybean	plastid	30.22	33.25
KRH03884	Soybean	cytosol	26.96	32.98
KRH69465	Soybean	nucleus	31.09	32.57
KRH03365	Soybean	nucleus, plastid	28.7	32.51
KRH54449	Soybean	plastid	29.13	31.83
KRH43090	Soybean	plastid	29.13	31.09
KRH52729	Soybean	cytosol	30.65	30.85
KRH62060	Soybean	cytosol	27.61	30.6
KRH24543	Soybean	cytosol, nucleus	46.74	28.48
KRH23424	Soybean	plastid	25.65	26.76
KRH09907	Soybean	cytosol, plastid	13.91	24.52

Protein Annotations

EntrezGene:100778593	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02000646	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_01G182100
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1J928	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH76925	ProteinID:KRH76925	ProteinID:KRH76925.1	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00023BE8B6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:51781695..51783530

Molecular Weight (calculated)

51266.8 Da

IEP (calculated)

9.526

GRAVY (calculated)

-0.529

Length

460 amino acids

Sequence
(BLAST)

001: MTGSSRKGRG YMDEGSIHGR KYGKLKKDEF DGYNSDSHPR KNNPITLDAP HLDPQMEADN APYDPSLSPL SKSPWSSHTN DDAFSGSNEN DALVGSLVRE
101: EGHIYSLAAT KDLLYTGSDS KNIRVWKNQK EFAGFKSNSG LVKAIVIAGE KILTGHQDGR IRVWKVSGKN EQQHKRVATL PTLRNYIKCS MKPSNYVEVR
201: RHRNVIWIKH YDAISCLSLT EDHSLIYSAS WDKTFKVWRT SNFKCLESVK AHDDAVNALV VGLNGMVFTG SADGTVKIWR REVQGKGTKH FFSQTLLKQE
301: CAVTSLAINE EGNVLYAGSS EGLVNYWVHE TNLEHKGVLR GHKLAVLCLA AAGSLVFSGS ADMAICVWKR TLSEEHTCVK ILSGHTGPVK CLAAEKDPEA
401: MCNERRWILY SGSLDKSVKV WKVSENINAG AQNNNHQPPR LSVDQFPRVS SLRKMGSRRY

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.