CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23013	Canola	cytosol	98.9	98.68
Bra012903.1-P	Field mustard	cytosol	99.78	97.63
CDY17780	Canola	cytosol	79.74	78.52
CDY52834	Canola	cytosol	79.07	77.71
AT3G50390.1	Thale cress	cytosol	79.96	77.4
CDY06729	Canola	cytosol	44.71	55.92
CDY70402	Canola	cytosol	44.27	55.52
VIT_07s0255g00110.t01	Wine grape	nucleus	60.35	55.02
CDX95477	Canola	cytosol	44.93	54.84
Solyc02g090150.1.1	Tomato	nucleus	54.19	54.42
PGSC0003DMT400026153	Potato	nucleus	55.07	54.35
Solyc03g044830.2.1	Tomato	nucleus	53.08	52.74
PGSC0003DMT400059001	Potato	extracellular	53.3	52.72
KRH28540	Soybean	nucleus	52.2	51.75
KRH76925	Soybean	nucleus	52.2	51.52
CDY48182	Canola	nucleus	49.78	50.33
CDX77053	Canola	cytosol	49.56	50.11
CDX76704	Canola	cytosol	49.78	48.6
CDY11480	Canola	cytosol	49.78	48.6
CDX99296	Canola	cytosol	46.04	45.83
CDX92289	Canola	cytosol	45.59	45.2
CDY18561	Canola	cytosol	45.81	45.02
CDX82320	Canola	nucleus	45.37	44.88
CDY69149	Canola	cytosol	45.37	44.88
CDX69050	Canola	cytosol	46.7	44.82
CDY16499	Canola	nucleus	45.59	44.33
CDX75426	Canola	cytosol	46.48	44.05
CDY46256	Canola	cytosol	47.14	43.76
CDX77246	Canola	nucleus	45.15	43.71
CDX76276	Canola	cytosol	46.92	43.56
CDY45305	Canola	cytosol	46.7	43.35
CDX72479	Canola	cytosol	46.04	42.74
CDY14665	Canola	plastid	32.16	35.87
CDY16242	Canola	plastid	32.16	35.7
CDY21432	Canola	cytosol, nucleus, plastid	29.96	35.05
CDY70872	Canola	nucleus	29.07	34.29
CDX78047	Canola	plastid	31.28	33.97
CDX73675	Canola	cytosol, mitochondrion, plastid	31.5	33.73
CDY23176	Canola	cytosol, plastid	31.28	33.49
CDX84804	Canola	nucleus	18.72	32.69
CDX84954	Canola	plastid	29.3	31.52
CDY51591	Canola	cytosol, mitochondrion	28.85	31.34
CDY03879	Canola	cytosol, mitochondrion	28.63	31.1
CDY27587	Canola	plastid	29.07	30.34
CDY36134	Canola	plastid	28.19	30.33
CDY24427	Canola	plastid	28.19	30.33

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDY02088	ProteinID:CDY02088	ProteinID:CDY02088.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00113464001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF270	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF1935	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaA03g40790D

Coordinates

chrLK031932:-:59790..61184

Molecular Weight (calculated)

50012.8 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.437

Length

454 amino acids

Sequence
(BLAST)

001: MHHKASSRDT NSQNFPKLKS VETDPDPDIY DITYVDVSPS VGSTSPLSKS PWIAHVDPTD LEPPHSGIKS TANTREPKNY SPNILMGSLF REEGHIYSLA
101: TSGDLLYTGS DSKNIRVWKN QTEFSSFKSN SGLVKAIVLA GDKIFTGHQD GKIRVWKVSS KDSNIFRRIG TMPVFRDYLR NSITPSSYFS FMRKNPTSTS
201: AQGFRHVDAI SCLTLSEDKK LLYSGSWDQT FKVWRISDLR CLESVKAHDD AVNAVVSGFD GLVFSGSADG TVKVWRREDQ AKETKHFFSE TLLKQDCAVT
301: AIAVDQSATL VYCGSSDGTV NFWERDNNMK NGGVLKGHKL AVLCLVAAGS LLFSGSADLG IRVWRRPERG GGEHVCIAVL KGHAGPVKCM AVERDQESAS
401: GEKRWIVYSG SLDRSVKMWR VSESSPPIED QSSDPFDGPT ELTMAPSFSG KGRE

Best Arabidopsis Sequence Match ( AT3G50390.1 )
(BLAST)

001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK

Arabidopsis Description

At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.