CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022372.1-P	Field mustard	cytosol	98.03	98.03
CDX99296	Canola	cytosol	94.76	95.18
CDX95477	Canola	cytosol	72.27	88.98
CDY18561	Canola	cytosol	87.77	87.01
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	85.37	82.66
CDX82320	Canola	nucleus	82.75	82.57
CDY69149	Canola	cytosol	81.88	81.7
CDX84804	Canola	nucleus	45.63	80.38
CDY16499	Canola	nucleus	73.14	71.73
CDX77246	Canola	nucleus	72.71	71.0
CDY06729	Canola	cytosol	47.38	59.78
CDY70402	Canola	cytosol	46.29	58.56
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	54.37	53.55
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	54.15	53.22
CDX69050	Canola	cytosol	53.49	51.8
CDX77053	Canola	cytosol	50.22	51.22
CDX75426	Canola	cytosol	53.49	51.15
CDY48182	Canola	nucleus	50.0	51.0
CDY45305	Canola	cytosol	52.4	49.08
CDX72479	Canola	cytosol	52.18	48.88
CDY46256	Canola	cytosol	52.18	48.88
CDY11480	Canola	cytosol	49.34	48.6
CDX76704	Canola	cytosol	49.34	48.6
CDX76276	Canola	cytosol	51.75	48.47
CDY02088	Canola	cytosol, mitochondrion, nucleus	45.2	45.59
CDY23013	Canola	cytosol	45.2	45.49
CDY17780	Canola	cytosol	45.41	45.12
CDY52834	Canola	cytosol	44.98	44.59
CDY16242	Canola	plastid	33.41	37.41
CDY14665	Canola	plastid	32.75	36.85
CDX78047	Canola	plastid	33.19	36.36
CDY23176	Canola	cytosol, plastid	33.41	36.08
CDX73675	Canola	cytosol, mitochondrion, plastid	33.41	36.08
CDX84954	Canola	plastid	32.53	35.31
CDY21432	Canola	cytosol, nucleus, plastid	29.69	35.05
CDY70872	Canola	nucleus	29.26	34.81
CDY51591	Canola	cytosol, mitochondrion	31.66	34.69
CDY03879	Canola	cytosol, mitochondrion	31.66	34.69
CDY36134	Canola	plastid	31.44	34.12
CDY24427	Canola	plastid	31.44	34.12
CDY27587	Canola	plastid	32.1	33.79

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX92289	ProteinID:CDX92289	ProteinID:CDX92289.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00154013001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22844	PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEFB3F	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA05g21180D

Coordinates

chrLK031871:+:1293002..1294378

Molecular Weight (calculated)

50130.7 Da

IEP (calculated)

8.604

GRAVY (calculated)

-0.416

Length

458 amino acids

Sequence
(BLAST)

001: MVIAAAETSG THHRRPTFAA FLNTDEEEQS HAADVIDPTS TSVNNQQLQS YASTTSGESS PNQVPSPWNQ TYSPYYTDTT TTPTMSPSPW SQTYSPYYKS
101: PWIYQTTPNV DDDSDNGLVG TIVRQEGHVY SLAASGDLLF TGSDSKNVRV WKDLKDFAGF KSTSGSVKAI VTTGNNRIFT GHQDGKIRIW RGSKKRTGVY
201: SRIGSLPSTK EFLTKSVNPK NYVQVRRHKN VLKIRHYDAV SCLSLNEELG LLYSGSWDKT LKVWRLSDSK CLESIQAHDD AVNTVAAGFD DLVFTGSADG
301: TLKVWKRELQ GKRTKHFLAN VLMKQENAVT ALAVNLTACV VYSGTSDGSV NFWEGKKYLS HGGILRGHRM AVLCLAAAGS LVLSGGADKN ICVWRRNGDG
401: SHSCLSVLTD HVGPVKCLTA VEEGEKDGNE GRWIVYSGSL DKSVKVWRVT ETAPPVIG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.