CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037545.1-P	Field mustard	cytosol	97.85	97.85
CDY18561	Canola	cytosol	97.85	78.79
CDX99296	Canola	cytosol	90.32	73.68
CDX82320	Canola	nucleus	90.32	73.2
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	93.01	73.15
CDY69149	Canola	cytosol	89.78	72.77
CDX92289	Canola	cytosol	88.98	72.27
CDY16499	Canola	nucleus	81.45	64.88
CDX77246	Canola	nucleus	81.45	64.61
CDX84804	Canola	nucleus	43.55	62.31
CDY06729	Canola	cytosol	57.8	59.23
CDY70402	Canola	cytosol	56.72	58.29
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	63.98	51.07
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	63.71	50.97
CDX77053	Canola	cytosol	61.02	50.56
CDY48182	Canola	nucleus	60.75	50.33
CDX69050	Canola	cytosol	63.44	49.89
CDX75426	Canola	cytosol	63.71	49.48
CDX76704	Canola	cytosol	59.41	47.53
CDY11480	Canola	cytosol	59.41	47.53
CDX72479	Canola	cytosol	62.37	47.44
CDY46256	Canola	cytosol	62.37	47.44
CDY45305	Canola	cytosol	62.37	47.44
CDX76276	Canola	cytosol	61.83	47.03
CDY02088	Canola	cytosol, mitochondrion, nucleus	54.84	44.93
CDY23013	Canola	cytosol	54.84	44.84
CDY17780	Canola	cytosol	54.3	43.82
CDY52834	Canola	cytosol	54.03	43.51
CDY16242	Canola	plastid	42.2	38.39
CDY14665	Canola	plastid	41.4	37.84
CDX78047	Canola	plastid	38.71	34.45
CDY21432	Canola	cytosol, nucleus, plastid	35.75	34.28
CDY23176	Canola	cytosol, plastid	38.98	34.2
CDX73675	Canola	cytosol, mitochondrion, plastid	38.98	34.2
CDY70872	Canola	nucleus	34.95	33.77
CDX84954	Canola	plastid	37.9	33.41
CDY51591	Canola	cytosol, mitochondrion	37.37	33.25
CDY03879	Canola	cytosol, mitochondrion	37.37	33.25
CDY24427	Canola	plastid	37.1	32.7
CDY36134	Canola	plastid	36.83	32.46
CDY27587	Canola	plastid	37.37	31.95

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX95477	ProteinID:CDX95477	ProteinID:CDX95477.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00101259001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE9EFD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC01g33690D

Coordinates

chrLK031889:-:518400..519518

Molecular Weight (calculated)

41027.8 Da

IEP (calculated)

9.571

GRAVY (calculated)

-0.287

Length

372 amino acids

Sequence
(BLAST)

001: MSPSPWNQTY SPYYKSPWIY QTRNVDDDSD NGLIGTIVRQ EGHVYSLAAS GDLLFTGSDS KNIRVWKDLK DFAGFKSTSG LVKAIVITGD NRIFTGHQDG
101: KIRVWRGSKR RTGGYSRIGN LPTLKELLTK SVNPKNYVEV RRRKNVLKIR HYDAVSSLSL NEELGLLYSG SWDKTLKVWR LSDSKCLESI QAHDDAINTV
201: AAGFDDLLFT GSADGTLKVW KRELQGRGTK HFLVNVLMKQ ESAVTALAVN LTALVVYCGS SDGTVNFWEG KKYFSHGGTL RGHRLAVLCL AAAGSLVLSG
301: GADKNICVWR RNGDGTHSYL SALMDHVGPV KCLAAVEEVE EDGEGRWIVY SGSLDKSVKV WRVKETASSV IG

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.