Factsheet for Bra037545.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95477	Canola	cytosol	97.85	97.85
CDY18561	Canola	cytosol	99.46	80.09
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	94.09	74.0
Bra001728.1-P	Field mustard	nucleus	91.13	73.86
Bra022372.1-P	Field mustard	cytosol	90.32	73.36
Bra014189.1-P	Field mustard	nucleus	82.8	65.95
Bra015611.1-P	Field mustard	cytosol	59.14	60.61
PGSC0003DMT400066737	Potato	cytosol, mitochondrion	65.32	52.15
Solyc01g109120.2.1	Tomato	cytosol, mitochondrion	65.05	52.04
Bra034310.1-P	Field mustard	nucleus	61.83	51.22
Bra007751.1-P	Field mustard	nucleus	60.22	49.78
Bra011525.1-P	Field mustard	cytosol	63.17	49.06
Bra017646.1-P	Field mustard	cytosol	62.37	47.44
Bra034622.1-P	Field mustard	cytosol	62.1	47.24
Bra036080.1-P	Field mustard	cytosol	55.11	44.47
Bra012903.1-P	Field mustard	cytosol	55.38	44.4
Bra032795.1-P	Field mustard	cytosol	34.95	42.07
Bra024637.1-P	Field mustard	plastid	41.94	38.24
Bra000611.1-P	Field mustard	nucleus	36.83	35.22
Bra006883.1-P	Field mustard	plastid	39.25	34.43
Bra012504.1-P	Field mustard	cytosol, mitochondrion	37.9	33.73
Bra033466.1-P	Field mustard	cytosol, plastid	38.44	33.73
Bra010967.1-P	Field mustard	cytosol, plastid	37.63	33.18

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra037545	EnsemblPlants:Bra037545.1	EnsemblPlants:Bra037545.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4F8Y3	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002544E65	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT3G18950 (E=4e-185) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA01:-:21805551..21806669

Molecular Weight (calculated)

40928.7 Da

IEP (calculated)

9.385

GRAVY (calculated)

-0.267

Length

372 amino acids

Sequence
(BLAST)

001: MSPSPWNQTY SPYYKSPWIY QSRNVDDDSD NGLIGTIVRQ EGHVYSLAAS GDLLFTGSDS KNIRVWKDLK DFAGFKSTSG LVKAIVITGD NRIFTGHQDG
101: KIRVWRGSKR RTGGYSRIGS LPTLKEFLTK SVNPKNYVEV RRRKNVLKIR HYDAVSCLSL NEELGLLYSG SWDKTLKVWR LSDSKCLESI QAHDDAINTV
201: AAGFDDLLFT GSADGTLKVW KRELQGRGTK HFLVNVLMKQ ESAVTALAVN LTALVVYCGS SDGTVNFWEG KKYLSHGGTL RGHRLAVLCL AAAGSLGLSG
301: GADKNICVWR RNGDGTHSCL SVLMDHVGPV KCLAAVEEVE EDGEGRWIVY SGSLDKSVKV WRVKETASSV IG

Best Arabidopsis Sequence Match ( AT3G18950.1 )
(BLAST)

001: MVIATETTSS SHHRRLTFAS FLNSDPAADE EEQSHGVDDI INPSSSNKNI NKDVHHNYRQ SQSNASTTSG ESSPNQVLSP WNQTYSPYYT DTTNTPSMSP
101: SPWNQTYSPY YKSPWIYQTR NIDDDTDNGL IGTIVRQDGH VYSLAASGDL LFTGSDSKNI RVWKDLKDHT GFKSTSGLVK AIVITGDNRI FTGHQDGKIR
201: VWRGSKRRTG GYSRIGSLPT LKEFLTKSVN PKNYVEVRRR KNVLKIRHYD AVSCLSLNEE LGLLYSGSWD KTLKVWRLSD SKCLESIQAH DDAINTVAAG
301: FDDLLFTGSA DGTLKVWKRE LQGKGTKHFL VNVLMKQENA VTALAVNITA AVVYCGSSDG TVNFWEGQKY LSHGGTLRGH RLAVLCLAAA GSLVLSGGAD
401: KNICVWRRNG DGSHSCLSVL MDHVGPVKCL TAVEDDGEGH REKGDQKWIV YSGSLDKSVK VWRVTESAST VIG

Arabidopsis Description

En/Spm-like transposon protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LJ71]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.