Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17780 | Canola | cytosol | 78.89 | 80.26 |
| Bra036080.1-P | Field mustard | cytosol | 78.89 | 80.26 |
| CDY02088 | Canola | cytosol, mitochondrion, nucleus | 77.4 | 79.96 |
| CDY52834 | Canola | cytosol | 78.46 | 79.65 |
| CDY23013 | Canola | cytosol | 76.97 | 79.34 |
| Bra012903.1-P | Field mustard | cytosol | 77.19 | 78.02 |
| AT1G47610.1 | Thale cress | cytosol | 42.86 | 57.27 |
| VIT_07s0255g00110.t01 | Wine grape | nucleus | 59.7 | 56.22 |
| Solyc02g090150.1.1 | Tomato | nucleus | 52.03 | 53.98 |
| PGSC0003DMT400026153 | Potato | nucleus | 52.67 | 53.7 |
| PGSC0003DMT400059001 | Potato | extracellular | 52.24 | 53.38 |
| Solyc03g044830.2.1 | Tomato | nucleus | 51.81 | 53.17 |
| KRH28540 | Soybean | nucleus | 51.39 | 52.62 |
| KRH76925 | Soybean | nucleus | 51.17 | 52.17 |
| AT2G26490.1 | Thale cress | cytosol | 49.04 | 49.46 |
| AT4G34380.1 | Thale cress | cytosol | 48.4 | 45.86 |
| AT1G49450.1 | Thale cress | nucleus | 45.42 | 45.22 |
| AT3G18950.1 | Thale cress | cytosol, nucleus, plastid | 45.2 | 44.82 |
| AT1G24130.1 | Thale cress | cytosol, plastid | 31.34 | 35.42 |
| AT3G51930.1 | Thale cress | cytosol, plastid | 30.7 | 34.7 |
| AT5G50120.1 | Thale cress | nucleus | 27.93 | 33.76 |
| AT1G24530.1 | Thale cress | cytosol, plastid | 28.57 | 32.06 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:824203 | UniProt:A2RVN9 | ProteinID:AEE78662.1 | ArrayExpress:AT3G50390 |
| EnsemblPlantsGene:AT3G50390 | RefSeq:AT3G50390 | TAIR:AT3G50390 | RefSeq:AT3G50390-TAIR-G | EnsemblPlants:AT3G50390.1 | TAIR:AT3G50390.1 |
| Unigene:At.50263 | EMBL:BT030030 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_190608.2 | PFAM:PF00400 |
| PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22844 | PANTHER:PTHR22844:SF270 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000034EFE0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
At3g50390 [Source:UniProtKB/TrEMBL;Acc:A2RVN9]
Coordinates
chr3:+:18702060..18703731
Molecular Weight (calculated)
51203.3 Da
IEP (calculated)
8.635
GRAVY (calculated)
-0.344
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSMHKKGTS RDVNSQAFTK LTKVETIPDP DIYDITYVDI SPSEGSSSPL SKSPWSVQVD PSAVDSPYHS VKVTTDTTKE KSTNHSPNIL LGSLVREEGH
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK
101: IYSLATSGDL LYTGSDSKNI RVWKNHVEFS SFKSNSGLVK AIVLAGDKIF TGHQDGKIRV WKAASKESNV HRRVGTMPNL LDYIRNSIVP SSYFNFTRRN
201: RSSAALGFRH LDAISCLALS EDKRLLYSGS WDKTFKVWRV SDLRCVESVN AHEDAVNAVV SGFDGLVFTG SADGTVKVWR REDQAKDTKH FFSETLLKQD
301: CAVTAIAVDQ SATLVYCGSS DGTVNFWERE NNMKNGGVLK GHKLAVLCLV AAGNLMFSGS ADLGIRVWRR PEGGGEHVCL SVLTGHAGPV KCLAVERDQE
401: SVSGERRWIV YSGSLDRSVK MWRVSESSPP MVNQEFKLPD QFGGGGGGGP AELTVAPSFS AQGRISPQK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.