Factsheet for AT1G47610.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015611.1-P	Field mustard	cytosol	88.89	85.95
CDY06729	Canola	cytosol	88.6	85.67
CDY70402	Canola	cytosol	87.18	84.53
GSMUA_Achr3P30740_001	Banana	cytosol	54.42	54.57
AT2G26490.1	Thale cress	cytosol	65.81	49.68
TraesCS5D01G389000.1	Wheat	cytosol	62.11	45.89
TraesCS5B01G382700.1	Wheat	cytosol	62.11	45.89
TraesCS5A01G379200.1	Wheat	cytosol	62.11	45.7
HORVU5Hr1G093830.1	Barley	cytosol	62.11	45.51
AT1G49450.1	Thale cress	nucleus	60.97	45.44
Os03t0738700-01	Rice	plasma membrane	61.54	44.17
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	60.97	44.03
AT3G18950.1	Thale cress	cytosol, nucleus, plastid	58.69	43.55
AT3G50390.1	Thale cress	cytosol	57.27	42.86
AT4G34380.1	Thale cress	cytosol	59.83	42.42
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	44.73	42.09
GSMUA_Achr6P20880_001	Banana	cytosol	43.3	38.78
GSMUA_AchrUn_...	Banana	nucleus	43.59	38.44
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	49.86	35.14
AT1G24130.1	Thale cress	cytosol, plastid	40.74	34.46
AT3G51930.1	Thale cress	cytosol, plastid	39.32	33.25
AT5G50120.1	Thale cress	nucleus	36.47	32.99
AT1G24530.1	Thale cress	cytosol, plastid	36.47	30.62
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	50.71	27.81

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:841170	ProteinID:AAD46024.1	ProteinID:AEE32194.1	ArrayExpress:AT1G47610
EnsemblPlantsGene:AT1G47610	RefSeq:AT1G47610	TAIR:AT1G47610	RefSeq:AT1G47610-TAIR-G	EnsemblPlants:AT1G47610.1	TAIR:AT1G47610.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_175192.1	PFAM:PF00400	PO:PO:0000037	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009052	PO:PO:0025022	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF128	UniProt:Q9SX94
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00000A3795	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

F16N3.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SX94]

Coordinates

chr1:+:17504714..17506043

Molecular Weight (calculated)

38708.3 Da

IEP (calculated)

9.771

GRAVY (calculated)

-0.257

Length

351 amino acids

Sequence
(BLAST)

001: MPRSDLTRGY SDGDSLVGEI VREEGHIYSL AATNDLLYTG SDNNYIRVWK NLNEFSGFKS NSGLVKAIVI SREAKVFTGH QDGKIRVWKT SSKNPRVYTR
101: AGSLPALKDV LKSSVKPSNY VEVRRCRTAL WIKHSDAVSC LSLAEDQGLL YSASWDRTVK VWRIHDLKCI ESIKAHDDAV NSVTTAESLV FTGSADGTVK
201: VWKREIRGKR TAHSLFQTLL KQESAVTALV TSHMAVYSGS SDGAVNFWEM GDKKLLKHCE VFKKHRLAVL CIAAAGKLLF SGAADKKICV WRREGKVHTC
301: VSVLTGHTGP VKCLAVVEPS GGEEEDGGDG RLVLYSGSLD KSVKVWRVPR H

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.