Factsheet for GSMUA_Achr3P30740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	61.14	57.37
AT1G47610.1	Thale cress	cytosol	54.57	54.42
Bra015611.1-P	Field mustard	cytosol	55.71	53.72
CDY06729	Canola	cytosol	55.71	53.72
CDY70402	Canola	cytosol	55.14	53.31
VIT_18s0001g11600.t01	Wine grape	nucleus	62.29	47.81
TraesCS5D01G389000.1	Wheat	cytosol	62.0	45.68
TraesCS5B01G382700.1	Wheat	cytosol	61.71	45.47
TraesCS5A01G379200.1	Wheat	cytosol	61.71	45.28
HORVU5Hr1G093830.1	Barley	cytosol	61.71	45.09
Os03t0738700-01	Rice	plasma membrane	62.86	44.99
EER93490	Sorghum	cytosol, endoplasmic reticulum, nucleus	62.29	44.86
GSMUA_Achr7P08190_001	Banana	cytosol	41.14	43.64
Solyc12g088980.1.1	Tomato	cytosol	50.29	43.35
PGSC0003DMT400039941	Potato	cytosol	50.29	43.24
CDY48182	Canola	nucleus	55.14	42.98
Bra034310.1-P	Field mustard	nucleus	55.14	42.98
CDX77053	Canola	cytosol	55.14	42.98
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	61.14	42.97
GSMUA_Achr9P26470_001	Banana	nucleus	50.57	42.75
KRH15278	Soybean	cytosol	44.29	42.58
Bra007751.1-P	Field mustard	nucleus	54.57	42.44
PGSC0003DMT400008621	Potato	mitochondrion	51.71	42.09
Solyc07g025140.2.1	Tomato	cytosol	53.14	42.08
KRH05757	Soybean	nucleus	56.0	42.06
PGSC0003DMT400016680	Potato	cytosol	53.14	41.7
CDX76704	Canola	cytosol	54.57	41.08
CDY11480	Canola	cytosol	54.57	41.08
AT2G26490.1	Thale cress	cytosol	54.29	40.86
Solyc04g079700.2.1	Tomato	cytosol	51.71	40.77
GSMUA_Achr9P09670_001	Banana	plastid	42.0	39.95
GSMUA_Achr6P20880_001	Banana	cytosol	43.71	39.03
GSMUA_Achr2P17180_001	Banana	golgi	50.29	37.53
GSMUA_AchrUn_...	Banana	nucleus	42.57	37.44
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	66.29	36.25
GSMUA_Achr6P34640_001	Banana	plastid	40.29	35.88
GSMUA_Achr6P36100_001	Banana	cytosol	36.86	32.82
GSMUA_Achr11P...	Banana	cytosol	31.43	29.57
GSMUA_Achr7P19910_001	Banana	cytosol	34.57	27.5
GSMUA_Achr9P07610_001	Banana	nucleus	30.86	26.54
GSMUA_Achr10P...	Banana	nucleus	34.0	25.32
GSMUA_Achr3P17140_001	Banana	cytosol	31.71	25.0
GSMUA_Achr8P28630_001	Banana	cytosol	30.0	20.43

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr3G30740_001	EnsemblPlants:GSMUA_Achr3P30740_001	EnsemblPlants:GSMUA_Achr3T30740_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0SJ88	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844
PANTHER:PTHR22844:SF145	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002948E33	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

WD-40 repeat family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G30740_001]

Coordinates

chr3:-:29366961..29370230

Molecular Weight (calculated)

38161.4 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.146

Length

350 amino acids

Sequence
(BLAST)

001: MAVSREHSPY DAELPSTAPA GSLVLEKGNI HSLAATGCLL YGGFDSKNIR VWKNQQDFAE FKSSSGFVKA IVVAADRVFT GHQDGKIRAW KVSPKDATVY
101: KRIGNLPRLK DILWSSLNPS NYVEARRHSS ALWIRHSDAI SCLSLNEEQG LLYSGSWDRT FKIWRISDSR CLESVVAHDD TINSIVAAVS GLVFTGSADG
201: TVKVWRRELH GKGTKHAPVQ TLLKQEWAMA VLCLVASGNL LLSGSADTTI CVWRREGAVH TCLSVLSGHA GPVKCLATAP DAGGDEDGGS GATRWTVYSG
301: SLDKSVKLWR VSEQAPEALL RGPQLVPNNL HWIMYINQSQ SLFLPQDCTC

Best Arabidopsis Sequence Match ( AT2G26490.1 )
(BLAST)

001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH

Arabidopsis Description

JGBProtein JINGUBANG [Source:UniProtKB/Swiss-Prot;Acc:O48716]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.