Factsheet for GSMUA_Achr7P19910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36100_001	Banana	cytosol	62.05	69.47
Os02t0740900-01	Rice	plastid	49.32	53.32
Zm00001d017994_P001	Maize	cytosol	42.5	52.53
EES07284	Sorghum	cytosol	50.91	51.38
TraesCS7B01G100800.1	Wheat	cytosol	44.55	50.78
KRH57017	Soybean	plastid	45.23	50.51
HORVU7Hr1G039810.1	Barley	plastid	43.64	50.0
VIT_17s0000g07690.t01	Wine grape	nucleus, plastid	46.14	50.0
Os06t0238700-00	Rice	cytosol, nucleus, peroxisome, plastid	44.55	49.12
KRH03365	Soybean	nucleus, plastid	44.32	48.03
VIT_01s0026g00880.t01	Wine grape	cytosol	46.36	47.78
KRH63468	Soybean	plastid	44.77	47.13
AT1G24130.1	Thale cress	cytosol, plastid	44.32	46.99
CDY16242	Canola	plastid	42.95	46.21
Bra024637.1-P	Field mustard	plastid	42.73	46.08
CDY14665	Canola	plastid	42.5	45.95
KRH54449	Soybean	plastid	43.64	45.61
CDY21432	Canola	cytosol, nucleus, plastid	40.0	45.36
Bra000611.1-P	Field mustard	nucleus	40.0	45.24
PGSC0003DMT400062862	Potato	cytosol	40.45	45.18
AT5G50120.1	Thale cress	nucleus	39.77	45.1
PGSC0003DMT400004842	Potato	plastid	43.64	44.55
Solyc04g005020.2.1	Tomato	plastid	43.41	44.52
GSMUA_Achr9P07610_001	Banana	nucleus	41.14	44.47
CDY70872	Canola	nucleus	38.41	43.9
KRH74694	Soybean	nucleus	43.18	43.88
Solyc05g006340.2.1	Tomato	cytosol	41.36	43.86
PGSC0003DMT400040333	Potato	cytosol	42.5	43.39
KRH69465	Soybean	nucleus	41.59	41.69
TraesCS7A01G195200.1	Wheat	cytosol	46.36	40.96
GSMUA_Achr3P17140_001	Banana	cytosol	41.14	40.77
TraesCS7D01G196700.1	Wheat	cytosol	45.23	40.04
Solyc03g113850.1.1	Tomato	cytosol, plastid	40.68	37.76
GSMUA_Achr8P28630_001	Banana	cytosol	40.45	34.63
GSMUA_Achr3P30740_001	Banana	cytosol	27.5	34.57
GSMUA_Achr7P08190_001	Banana	cytosol	24.55	32.73
GSMUA_Achr9P26470_001	Banana	nucleus	28.86	30.68
GSMUA_Achr11P...	Banana	cytosol	25.68	30.38
GSMUA_Achr4P10690_001	Banana	cytosol, endoplasmic reticulum, plastid	24.55	28.95
GSMUA_Achr2P17180_001	Banana	golgi	29.77	27.93
GSMUA_Achr9P09670_001	Banana	plastid	22.73	27.17
GSMUA_Achr6P20880_001	Banana	cytosol	23.41	26.28
GSMUA_AchrUn_...	Banana	nucleus	23.18	25.63
GSMUA_Achr6P34640_001	Banana	plastid	22.27	24.94
GSMUA_Achr10P...	Banana	nucleus	25.45	23.83
GSMUA_Achr4P07470_001	Banana	endoplasmic reticulum, plasma membrane	26.14	23.09
GSMUA_Achr4P03080_001	Banana	mitochondrion, nucleus, peroxisome, plasma membrane	26.36	18.12

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G19910_001
EnsemblPlants:GSMUA_Achr7P19910_001	EnsemblPlants:GSMUA_Achr7T19910_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TJ28
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF278
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002960315	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative Uncharacterized WD repeat-containing protein alr3466 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19910_001]

Coordinates

chr7:+:22921405..22929013

Molecular Weight (calculated)

47546.6 Da

IEP (calculated)

9.619

GRAVY (calculated)

-0.190

Length

440 amino acids

Sequence
(BLAST)

001: MSLAAPHCAI PCHVDDDDST HLLPKSISLS TQLSLPSLRS LDSCAETVPY SLHRCTATLR AHSSYVSAIA VHGESVYSGS PDQEIRLWPC VHLDSASSSS
101: SSSSAPRTDR LTSFTVAAAK SPVKSLVVAG DNLFSSHQDG KICVWQINRR ERQHCKLKAV LPTQKDRFLS LLVPENYVQV RRHKKCTWVH HVDAVSGLAV
201: SHDGALLYSV SWDRALKVWR TSDFKCMESV AGAHRDAINA VAVSLDGHVY TGSADARINV WRRGGEGGTK HSLVQTLERH RSAVNALALS ADGSVLYSGA
301: CDRSVVVWEG GGGRMEAAGA LRGHRRAILC LAAVGGVVCS GSADRTVRVW KRGVLEKGRY WCLAVLEGHG GPIKSLTAAP VNKARAVDSA VVTIRASRSD
401: GAEPPDRRPP WRRAAPSLKA PLVDFLRLPS RECPRESRTL

Best Arabidopsis Sequence Match ( AT1G24130.1 )
(BLAST)

001: MGLLPCSCPL PCNETRSECE TKSTHHQSES STSSSLLSQP SLPLVPSLSF QHQSSSVDHH CLATLKDKSS YVSSLAVSDK LLYTGSSNSE IRVWPREPPF
101: SPEYSTGDDR NVVANGNGGV KSLVILGDKL ISAHQDHKIR VWKIIDESNR RGQKYKCVAT LPTMNDRFKT LFSSKSYVEV RRHKKCTWVH HVDAVSSLAL
201: SQDGSLLYSA SWDRSFKIWR TSDFKCLDSI EKAHDDAINA IVVSKDGFVY TGSADKKIKV WNKKDKKHSL VATLTKHLSA VNALAISEDG KVLYSGACDR
301: SILVWERLIN GDDEELHMSV VGALRGHRKA IMCLAVASDL VLSGSADKSL RVWRRGLMEK EGYSCLAVLE GHTKPVKSLA VSVSDSDSNS DYSCMVYSGS
401: LDLSLKVWNL RVSSI

Arabidopsis Description

F3I6.5 protein [Source:UniProtKB/TrEMBL;Acc:O48679]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.