Factsheet for TraesCS4B01G072300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G242800.1	Wheat	plastid	94.71	96.14
TraesCS4D01G071100.1	Wheat	plastid	96.41	96.0
TraesCS4B01G072200.1	Wheat	plastid	95.98	94.58
TraesCS4B01G072100.1	Wheat	plastid	91.97	89.69
HORVU4Hr1G012000.11	Barley	plastid	87.95	86.67
TraesCS5B01G068600.1	Wheat	cytosol	64.06	67.33
Zm00001d033304_P001	Maize	mitochondrion, plastid	67.23	66.11
OQU91330	Sorghum	mitochondrion	67.86	64.72
Os03t0625300-00	Rice	mitochondrion	60.89	54.86
GSMUA_Achr9P26470_001	Banana	nucleus	47.57	54.35
GSMUA_Achr7P08190_001	Banana	cytosol	36.15	51.82
GSMUA_Achr9P09670_001	Banana	plastid	39.32	50.54
TraesCS5B01G382700.1	Wheat	cytosol	47.57	47.37
GSMUA_Achr6P34640_001	Banana	plastid	37.63	45.29
GSMUA_Achr2P17180_001	Banana	golgi	43.13	43.5
TraesCS3B01G532800.1	Wheat	cytosol, plastid	31.29	34.26
TraesCS7B01G100800.1	Wheat	cytosol	27.7	33.94
TraesCS3B01G182500.1	Wheat	cytosol	30.44	28.51
TraesCS2B01G358100.1	Wheat	plastid	26.85	28.41

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF323	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4B01G072300
EnsemblPlants:TraesCS4B01G072300.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:67542399..67543820

Molecular Weight (calculated)

50089.5 Da

IEP (calculated)

8.430

GRAVY (calculated)

-0.241

Length

473 amino acids

Sequence
(BLAST)

001: MGNHQKLLNF LRPDPAVAAC SPRSFSSSSA SVSDDDGYSC SSYPTTDGDA SPSRYGGSST PPTPKSPWAH LPGLGAGGAV AEPGATGLIA SLVKEDGHVY
101: SLAATGDVLY TGTDSRNVRV WRDQRELAGF RTASGLVKAI VVADDGRIFT GHQDGKVRVW RADADNPAVH RQVGSLPKLK DYLKSAVNPT SYVETQRKGR
201: QRAVWLRHSD AVSALSLDEG AGLLYSASWD RTFKVWRVSD SKYLESVSAH DDAVNTVAAA GFDSVVFTGS ADGTVKVWRR EMAAKGDATK HVLEKVLRKG
301: ESAVTAIAVS PEDRVVYVGS SDGLVTYWYW VDGEARYGGV LKGHKMAVMC LAVAGNVVVS GSADRTLCVW RRDGAEHVSL SVLTGHTGPV KCVAMDEEAA
401: AGSGGVRRFV VYSGSLDGSV KVWRLSDAQA PAPVTERTAA PSQAWSGRPA PATYAEAWAP YQATAEPKRV AAA

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.