Factsheet for HORVU4Hr1G012000.11

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G242900.1	Wheat	plastid	89.38	88.45
TraesCS4D01G071000.1	Wheat	plastid	88.75	88.02
TraesCS4B01G072300.1	Wheat	plastid	86.67	87.95
TraesCS4A01G242800.1	Wheat	plastid	85.21	87.77
TraesCS4B01G072100.1	Wheat	plastid	88.54	87.63
TraesCS4D01G071100.1	Wheat	plastid	86.46	87.37
TraesCS4B01G072200.1	Wheat	plastid	86.25	86.25
Zm00001d033304_P001	Maize	mitochondrion, plastid	66.25	66.11
OQU91330	Sorghum	mitochondrion	66.46	64.31
Os03t0625300-00	Rice	mitochondrion	58.33	53.33
GSMUA_Achr9P26470_001	Banana	nucleus	44.79	51.93
GSMUA_Achr7P08190_001	Banana	cytosol	34.79	50.61
GSMUA_Achr9P09670_001	Banana	plastid	37.5	48.91
HORVU5Hr1G093830.1	Barley	cytosol	45.62	45.72
GSMUA_Achr6P34640_001	Banana	plastid	36.25	44.27
HORVU5Hr1G017260.1	Barley	plastid	47.71	43.21
GSMUA_Achr2P17180_001	Banana	golgi	41.67	42.64
HORVU3Hr1G106030.1	Barley	plastid	32.71	36.01
HORVU7Hr1G039810.1	Barley	plastid	27.08	33.85
HORVU3Hr1G031720.2	Barley	cytosol	30.0	28.4
HORVU2Hr1G083090.1	Barley	mitochondrion, plastid	26.25	28.06

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287N8Q3	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU4Hr1G012000	EnsemblPlants:HORVU4Hr1G012000.11	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF323
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B46E8D6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:38400138..38402085

Molecular Weight (calculated)

50659.1 Da

IEP (calculated)

8.152

GRAVY (calculated)

-0.270

Length

480 amino acids

Sequence
(BLAST)

001: MGNHQKLLNF LRPDPAVAAC SPRSFSSSSA SVSDDDSYSS SPSRYGGSST PPTPKSPWAH LPGLAAEPGA TGGASAQHEA TGLIASLVKE DGHVYSLAAT
101: GDVLYTGTDS RNVRVWRDQR ELAGFRTASG LVKAIVVADD GRIFTGHQDG KVRVWRADAG NPAAHRQVGS LPKLRDYLKS AVNPTSYVET QRRGRHRAVW
201: LRHSDAVSSL SLDEGAGLLY SASWDRTFKV WRVSDSKCLE SVSAHDDAVN TVAAAGFDSV VFTGSADGTV KVWRREPAAK KGDATEHVLE KVLRKGEGAV
301: TAIAVSPEDR VVYAGSSDGL VTYWYWADGE ARYGGVLKGH KMAVXCLAVA GNVVVSGSAD RTLCAWRRDG AEHACLGVLA GHAGPVKCVA MDEEAAAGPG
401: GDRRFVVYSG SLDGSVKVWR LSDAEAGPGT TVPVTERTAA ARAQPSQVWR GQSAQAPYAE EWALALHQTP ELKRVLVAAA

Best Arabidopsis Sequence Match ( AT4G34380.1 )
(BLAST)

001: MRNETGGTMV VDLQTDPYNN IHSRHNLSYD LSEGPKPRPK FGNISKTDHD EIFPPDDPII INSNVTHQRF SSVSASTMSS GPASGEGSPC VMSPWARVSP
101: PWGADFNEDN VLETNGLIGS IVRKEGHIYS LAASGDLLYT GSDSKNIRVW KNLKEHAGFK SSSGLIKAIV IFGDRIFTGH QDGKIRIWKV SKRKPGKHKR
201: VGTLPTFKSM VKSSVNPKHF MEVRRNRNSV KTKHNDAVSS LSLDVELGLL YSSSWDTTIK VWRIADSKCL ESIHAHDDAI NSVMSGFDDL VFTGSADGTV
301: KVWKRELQGK GTKHTLAQVL LKQENAVTAL AVKSQSSIVY CGSSDGLVNY WERSKRSFTG GILKGHKSAV LCLGIAGNLL LSGSADKNIC VWRRDPSDKS
401: HQCLSVLTGH MGPVKCLAVE EERACHQGAK ASVAEGDRKW IIYSGSLDKS VKVWRVSERM ATWKEMDEPA ASSERKSSSS PHEGSGAWSS RNVEK

Arabidopsis Description

At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.