Factsheet for TraesCS4B01G072200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G072300.1	Wheat	plastid	94.58	95.98
TraesCS4B01G072100.1	Wheat	plastid	90.0	89.07
HORVU4Hr1G012000.11	Barley	plastid	86.25	86.25
TraesCS5B01G068600.1	Wheat	cytosol	62.92	67.11
Zm00001d033304_P001	Maize	mitochondrion, plastid	66.46	66.32
OQU91330	Sorghum	mitochondrion	67.29	65.12
GSMUA_Achr9P26470_001	Banana	nucleus	47.29	54.83
Os03t0625300-00	Rice	mitochondrion	59.58	54.48
GSMUA_Achr7P08190_001	Banana	cytosol	35.62	51.82
GSMUA_Achr9P09670_001	Banana	plastid	39.17	51.09
TraesCS5B01G382700.1	Wheat	cytosol	46.88	47.37
GSMUA_Achr6P34640_001	Banana	plastid	37.92	46.31
GSMUA_Achr2P17180_001	Banana	golgi	42.08	43.07
TraesCS3B01G532800.1	Wheat	cytosol, plastid	31.04	34.49
TraesCS7B01G100800.1	Wheat	cytosol	27.08	33.68
TraesCS3B01G182500.1	Wheat	cytosol	30.0	28.51
TraesCS2B01G358100.1	Wheat	plastid	26.25	28.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22844	PANTHER:PTHR22844:SF323	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4B01G072200
EnsemblPlants:TraesCS4B01G072200.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:67352783..67354225

Molecular Weight (calculated)

50707.2 Da

IEP (calculated)

7.835

GRAVY (calculated)

-0.264

Length

480 amino acids

Sequence
(BLAST)

001: MGNHQKLLNF LRPDPAAVGA CSPRSFSSSS PSVSDDDGYS CSSYPTTDGG DASPSRYCGS STPPTPKSPW AHLPGLGAGG AVAEPGATGL IASLVKEDGH
101: VYSLAATGDV LYTGTDSRNV RVWRDQRELA GFRTASGLVK AIVVADDGRI FTGHQDGKVR VWRADADNPA VHRQVGSLPK LKDYLKSAVN PTSYVETQRK
201: GRQRTVWLRH SDAVSSLSLD EGAGLLYSAS WDRTFKVWRV SDSKCLESVS AHDDAVNTVA AAGFDNVVFT GSADGTVKVW RREMAAKGDA TRHVLEKVLR
301: KGEGAVTAIA VSPEDRVVYV GSSDGLVTYW YWVDGEARYG GVLKGHKMAV MCLAVAGNVV VSGSADQTLC VWRRDGAEHV SLGVLAGHTG PVKCAAMDEE
401: AAAGSGGDRR FVVYSGSLDG SVKVWRLSDA QAAPQGAPAP LTERTAAPSQ AWSGRPVPAT YAEAWAPYQP ISEPKRVAAA

Best Arabidopsis Sequence Match ( AT1G49450.1 )
(BLAST)

001: MAIEENRSHN DYLRRMTFAA FLKSGSLAAE EETYHSDGDH HNQSTFSSNS DSQRPSNASS ASSDSSSPIY PLSPWNQTYY PSNDNTTSFS SVTQSPWNQT
101: YSPYHKSPWI YQTRNSDFED DPDNGLIGTV VRQEGHVYSL AASGDLLFTG SDSKNIRVWK DLKDFSGFKS TSGFVKAIVV TRDNRVFTGH QDGKIRVWRG
201: SKKNPEKYSR VGSLPTLKEF LTKSVNPRNY VEVRRRKNVL KIRHFDAVSC LSLNEDLGLL YSGSWDKTLK VWRLSDSKCL ESIEAHDDAV NTVVSGFDDL
301: VFTGSADGTL KVWKREVQGK EMKHVLVQVL MKQENAVTAL AVNLTDAVVY CGSSDGTVNF WERQKYLTHK GTIHGHRMAV LCLATAGSLL LSGGADKNIC
401: VWKRNGDGSH TCLSVLMDHE GPVKCLAAVE EAEEDHNDGD DGGEKGDQRW IVYSGSLDNS VKVWRVTDYA S

Arabidopsis Description

F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.