Factsheet for PGSC0003DMT400077106

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400047241
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400067082
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51500.1	PGSC0003DMT400014123	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400018569	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400046278	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400054299	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400058435	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400070437	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400097662	AT3G56800.1	15299147
AT1G51500.1	PGSC0003DMT400047241	AT4G03560.1	15299147
AT3G21090.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G21090.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065350.1.1	Tomato	cytosol, peroxisome, plasma membrane	98.09	98.09
VIT_06s0061g00230.t01	Wine grape	plasma membrane	67.45	73.95
KRH24076	Soybean	cytosol, peroxisome, plasma membrane	70.97	69.64
AT3G21090.1	Thale cress	cytosol, peroxisome, plasma membrane	70.09	69.18
AT1G51500.1	Thale cress	cytosol, peroxisome, plasma membrane	69.65	69.14
KRH29048	Soybean	cytosol, peroxisome, plasma membrane	70.53	68.81
Bra030437.1-P	Field mustard	nucleus, peroxisome, plasma membrane	69.21	68.21
CDY43913	Canola	nucleus, peroxisome, plasma membrane	69.21	68.21
Bra031249.1-P	Field mustard	peroxisome	68.77	67.87
CDX87823	Canola	nucleus, peroxisome, plasma membrane	67.16	67.65
CDY61513	Canola	golgi, mitochondrion, peroxisome, plasma membrane	62.17	67.3
CDY06406	Canola	peroxisome	66.86	67.16
Zm00001d010426_P001	Maize	plastid	63.93	63.19
EES19248	Sorghum	cytosol, peroxisome, plasma membrane	63.64	63.08
GSMUA_Achr4P00390_001	Banana	plasma membrane	56.89	62.68
Os05t0222200-01	Rice	nucleus, peroxisome, plasma membrane	63.34	61.71
HORVU1Hr1G030200.1	Barley	nucleus, peroxisome, plasma membrane	61.88	61.25
TraesCS1D01G126600.1	Wheat	nucleus, peroxisome, plasma membrane	61.73	61.1
TraesCS1A01G126900.1	Wheat	nucleus, peroxisome, plasma membrane	61.73	61.1
TraesCS1B01G147700.1	Wheat	nucleus, peroxisome, plasma membrane	61.58	60.96
CDY18337	Canola	plasma membrane	21.99	60.73
PGSC0003DMT400069344	Potato	plasma membrane	22.14	53.55
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	53.81	51.91
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	48.83	50.76
PGSC0003DMT400032669	Potato	mitochondrion	7.92	48.21
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	43.26	46.9
GSMUA_Achr4P00380_001	Banana	plastid	55.13	45.36
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	42.23	44.65
PGSC0003DMT400043270	Potato	cytosol	40.47	42.33
PGSC0003DMT400031312	Potato	plastid	33.87	31.95
PGSC0003DMT400050589	Potato	plastid	32.99	31.12
PGSC0003DMT400031316	Potato	mitochondrion, plastid	23.31	14.83

Protein Annotations

EntrezGene:102592097	MapMan:21.9.4.2	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1CXW9	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400029989
PGSC:PGSC0003DMG400029989	EnsemblPlants:PGSC0003DMT400077106	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF338
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000294D3B1	RefSeq:XP_006365197.1	SEG:seg

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400029989]

Coordinates

chr11:+:37030546..37037677

Molecular Weight (calculated)

76085.3 Da

IEP (calculated)

9.663

GRAVY (calculated)

0.140

Length

682 amino acids

Sequence
(BLAST)

001: MEIEVTSSSS DIEKGVIHSQ GVAYLVWEDL TVMLPNFGQG PTKKLLHGLS GYAEPGRIMA IMGPSGSGKS TLLDTLAGRL STNVVMTGNI LLNGKKRRLD
101: YGVVAYVTQE DTLLGTLTPR ETIMYSAHLR LPTSMTKEEV DDIVEGTIME MGLGDCADRL VGNWQVRGIS GGEKKRLGIA LEILVRPRIL FLDEPTTGLD
201: SASAFFVVQA LKNISRDGRT VISSIHQPSS EVFALFDDLF LLSGGEAVYF GEAQLAVQFF AESGFPCPSR RNPSDHFLRC VNSDFDVVTA TLKGSQRLRE
301: THKSDYLMNM ATAEIKELLA SKYKHSPYAT RARSRMRELL ATQGVEIEIV KGSQAGWGKQ LLTLTRRSFV NMSRDKGYYW SRIVIYIIVA FAVGTLFYDV
401: GTSYTAILAR GACGGFVTGY MTFMSIGGFP SFIEEMKVFT KERLNGHYGV AAFVLANFLS SFPFLVAVSL LTGTITYYMV FRARFFRYVF FCLNLFGCIA
501: VVESCMMIVA SLVPNFLMGI ITGAGVLGIM MMTAGFFRLL PDLPKPIWRY PISFIGYGAW GLQGSYKNDM IGLEFDPLIP GGEKLTGEYV ITNMFKLSLD
601: HSKWWDLLAL YSLIVMYRLL FFIILKLKER ATPFFRSMYA KRTMHKLKRR PSFKRKPSLS YSKRQHALRS LSSQEGLSSP IP

Best Arabidopsis Sequence Match ( AT3G21090.1 )
(BLAST)

001: MELEGSSSGR RQLPSKLEMS RGAYLAWEDL TVVIPNFSDG PTRRLLQRLN GYAEPGRIMA IMGPSGSGKS TLLDSLAGRL ARNVVMTGNL LLNGKKARLD
101: YGLVAYVTQE DVLLGTLTVR ETITYSAHLR LPSDMSKEEV SDIVEGTIME LGLQDCSDRV IGNWHARGVS GGERKRVSIA LEILTRPQIL FLDEPTSGLD
201: SASAFFVIQA LRNIARDGRT VISSVHQPSS EVFALFDDLF LLSSGESVYF GEAKSAVEFF AESGFPCPKK RNPSDHFLRC INSDFDTVTA TLKGSQRIQE
301: TPATSDPLMN LATSVIKARL VENYKRSKYA KSAKSRIREL SNIEGLEMEI RKGSEATWWK QLRTLTARSF INMCRDVGYY WTRIISYIVV SISVGTIFYD
401: VGYSYTSILA RVSCGGFITG FMTFMSIGGF PSFLEEMKVF YKERLSGYYG VSVYILSNYI SSFPFLVAIS VITGTITYNL VKFRPGFSHY AFFCLNIFFS
501: VSVIESLMMV VASVVPNFLM GLITGAGLIG IIMMTSGFFR LLPDLPKIFW RYPVSYISYG SWAIQGGYKN DFLGLEFEPL FPGEPKMTGE EVIEKVFGVK
601: VTYSKWWDLA AVVAILVCYR LLFFVVLKLR ERAGPALKAI QAKRTMRNLD RRPSFKRMPS LSLSLSSMSS RRHQPLRSLS SQEGLNSPIH Y

Arabidopsis Description

ABCG15ABC transporter G family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWI9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.