Factsheet for PGSC0003DMT400031312

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074970.1.1	Tomato	plastid	81.88	98.34
PGSC0003DMT400050589	Potato	plastid	85.48	85.48
VIT_06s0061g00350.t01	Wine grape	plastid	81.19	81.3
KRG89865	Soybean	plastid	54.36	80.2
KRH22852	Soybean	cytosol, plastid	78.7	78.59
KRH26514	Soybean	plasma membrane, plastid	78.42	78.31
CDY30512	Canola	cytosol	44.67	78.21
CDX77150	Canola	plastid	75.66	74.93
AT2G28070.1	Thale cress	plastid	75.52	74.79
Bra011981.1-P	Field mustard	plastid	75.38	74.45
Bra034385.1-P	Field mustard	plastid	70.82	74.31
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	69.99	69.32
CDX71393	Canola	plastid	75.1	68.05
CDY04533	Canola	mitochondrion	75.52	66.91
EER90467	Sorghum	cytosol, plasma membrane, plastid	63.07	63.16
HORVU5Hr1G125010.1	Barley	cytosol, peroxisome, plasma membrane, plastid	61.83	61.83
TraesCS5D01G551400.1	Wheat	cytosol, peroxisome, plasma membrane	61.83	61.74
Os03t0859500-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	61.27	61.61
TraesCS4A01G315900.1	Wheat	cytosol, peroxisome, plasma membrane	61.41	61.07
Zm00001d034918_P003	Maize	cytosol, nucleus, plasma membrane, plastid	63.07	42.3
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	33.06	37.05
PGSC0003DMT400032669	Potato	mitochondrion	5.53	35.71
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	30.98	35.61
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	33.61	34.37
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	31.95	33.87
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	30.71	33.84
PGSC0003DMT400043270	Potato	cytosol	30.15	33.44
PGSC0003DMT400069344	Potato	plasma membrane	12.31	31.56
PGSC0003DMT400031316	Potato	mitochondrion, plastid	22.13	14.93

Protein Annotations

EntrezGene:102589437	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1AVH5
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400011999	PGSC:PGSC0003DMG400011999	EnsemblPlants:PGSC0003DMT400031312
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF200	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI0002965A99	RefSeq:XP_006347196.1	SEG:seg	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400011999]

Coordinates

chr6:-:55502947..55512202

Molecular Weight (calculated)

80856.5 Da

IEP (calculated)

9.163

GRAVY (calculated)

0.189

Length

723 amino acids

Sequence
(BLAST)

001: MDEIQSQSDH YRSPSSSVSS PANRLPSSNF FYSRKPGALR QPISFEDSPV WDETDIEVKV DEGGDSINAA TTPPSPSLSK INSGSLPSPS LIEREVVTRK
101: IAGASIAWKD LTVTIKGKRK YSDKVVKSSH GYALPGTMTV IMGPAKSGKS TLLRALAGRL PDSTRMYGEV FVNGTRRHMP YGSYGYVDRE TTLIGSLSVR
201: EFLYYSALLQ LPGFFCQRRS VVEDAIDAMS LGDYANKLIG GNCYMRGLRS GERRRVSIAR ELVMRPHILF IDEPLYHLDS VSALLMMVTL KKLATSGCTL
301: IFTICQSSTE VFGLFDRICL LSNGKTLFFG ETLACLQHFS NAGFPCPIMQ SPSDHFLRAI NTEFDRIIVM CKSWQDNHGD LSSVSMDTAI AIRTIETTYR
401: SSADAAAVES MIVKLTEKEG PSLKRKGMAG NATQVAVLTW RSLLIMSREW KYYWLRLILY VFLALCIGTV FSGLGHSLFS VMRRVAAIFV FVSFTSLLGV
501: AGVPSQLKEI KIYTYEESNQ HSGAFVFLLG QLFASIPFLF LISISSSLVF YFLIGLRDEF SLLMYFVLNF FACLLVNEGL LLLVASICQN IFWSILSFVS
601: IHVIMMLSAG FFRIRSALPR PAWMYPISYI AFHTYSIQGL LENEYIGTSF AVGQVRTISG YEALGNVYDI SDDSNSKWKN LLVLFVMAVA YKVVIFILLK
701: CCIRKNHSVH KLFRCNQNRK DYK

Best Arabidopsis Sequence Match ( AT2G28070.2 )
(BLAST)

001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR

Arabidopsis Description

ABCG3ABC transporter G family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.