Factsheet for PGSC0003DMT400041814

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g009100.1.1	Tomato	cytosol, peroxisome, plasma membrane	93.8	93.22
PGSC0003DMT400032669	Potato	mitochondrion	12.4	71.43
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	68.84	70.59
GSMUA_AchrUn_...	Banana	plasma membrane	60.16	65.32
PGSC0003DMT400043270	Potato	cytosol	63.57	62.88
GSMUA_Achr6P04180_001	Banana	plasma membrane	57.52	62.77
VIT_00s0625g00020.t01	Wine grape	plastid	70.85	61.67
GSMUA_Achr10P...	Banana	plasma membrane	39.38	60.77
GSMUA_AchrUn_...	Banana	plasma membrane	54.42	59.9
Os10t0163290-00	Rice	cytosol, endoplasmic reticulum, extracellular	23.57	59.84
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	57.36	58.82
Os09t0472100-01	Rice	plasma membrane	62.79	56.17
TraesCS2B01G128800.1	Wheat	plasma membrane	41.24	55.88
VIT_00s0625g00050.t01	Wine grape	cytosol	55.66	55.83
TraesCS7B01G490800.1	Wheat	peroxisome	50.23	55.38
Os09t0472200-00	Rice	plasma membrane	61.4	55.31
TraesCS5B01G247800.1	Wheat	plasma membrane, plastid	62.79	55.25
TraesCS5D01G257000.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	62.79	55.25
TraesCS5A01G249900.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	62.79	55.25
TraesCS5B01G248000.1	Wheat	plasma membrane, plastid	62.48	55.21
TraesCS5D01G257400.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	62.64	55.12
TraesCS5B01G247700.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	62.48	54.98
TraesCS5D01G257100.2	Wheat	nucleus, peroxisome, plasma membrane, plastid	62.48	54.68
OQU84078	Sorghum	cytosol, plasma membrane	48.53	54.43
HORVU2Hr1G019010.2	Barley	plasma membrane	35.19	54.18
HORVU5Hr1G070400.3	Barley	cytosol, peroxisome	63.41	54.17
Os12t0409700-00	Rice	cytosol, peroxisome, plasma membrane	35.66	54.12
KXG35822	Sorghum	mitochondrion, nucleus, peroxisome, plasma membrane	61.09	53.68
Zm00001d020811_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	60.16	52.72
TraesCS7B01G490700.1	Wheat	plastid	35.66	52.63
TraesCS2A01G110200.1	Wheat	plastid	54.11	52.01
TraesCS2B01G128400.1	Wheat	plastid	54.42	51.92
TraesCS2D01G110700.1	Wheat	plastid	53.33	51.27
VIT_00s0989g00010.t01	Wine grape	plastid	69.92	50.62
TraesCSU01G100600.1	Wheat	plastid	54.11	50.36
TraesCS2D01G110800.1	Wheat	plastid	52.87	50.3
TraesCSU01G100800.1	Wheat	plastid	53.8	50.07
TraesCS7A01G566200.1	Wheat	plasma membrane, plastid	53.33	49.78
TraesCS6A01G140300.2	Wheat	plastid	54.42	49.51
KXG34927	Sorghum	plastid	53.64	49.5
Os09t0250800-00	Rice	mitochondrion	56.43	49.19
KXG19944	Sorghum	plastid	55.5	49.18
HORVU6Hr1G027440.10	Barley	plastid	52.56	48.92
Zm00001d019398_P001	Maize	plastid	52.25	48.63
TraesCS6D01G128600.1	Wheat	plastid	53.33	48.45
TraesCS4A01G308200.1	Wheat	plastid	52.4	48.35
PGSC0003DMT400069344	Potato	plasma membrane	21.09	48.23
TraesCS6B01G168800.2	Wheat	plastid	52.87	47.96
Os07t0288700-02	Rice	plastid	54.11	47.87
Os12t0411700-01	Rice	plastid	52.87	47.83
HORVU2Hr1G018920.1	Barley	cytosol	37.67	47.55
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	51.78	47.24
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	47.29	46.49
Zm00001d048621_P001	Maize	plastid	51.78	46.39
Os09t0125900-01	Rice	plastid	37.05	45.52
TraesCS2B01G128700.1	Wheat	plastid	42.64	44.21
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	44.65	42.23
PGSC0003DMT400031312	Potato	plastid	37.05	33.06
PGSC0003DMT400050589	Potato	plastid	36.59	32.64
AT3G21080.1	Thale cress	cytosol, peroxisome, plasma membrane	11.32	28.63
PGSC0003DMT400031316	Potato	mitochondrion, plastid	24.34	14.65

Protein Annotations

EntrezGene:102585621	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1BC22	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400016225	PGSC:PGSC0003DMG400016225
EnsemblPlants:PGSC0003DMT400041814	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF229	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002967F37	RefSeq:XP_006353283.1	SEG:seg	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400016225]

Coordinates

chr11:-:2753615..2761615

Molecular Weight (calculated)

72459.9 Da

IEP (calculated)

8.466

GRAVY (calculated)

0.107

Length

645 amino acids

Sequence
(BLAST)

001: MDSPIDEVPK NMSKKKESDP LILATKINIS SDYNDGIYLS WKDLWVSVPD KKLGRRPILE GISGYAQPGE VLAIMGPSGC GKSTLLDALS GRLASNTRQS
101: GDILVNGRKQ ALAFGTSAYV TQDDTLMATL TVKETVYYSA QLQLPQSMSL HEKKERAEET IKEMGLQEAM NTRIGGWSLK GLSGGQKRRV SICIEILTRP
201: KLLFLDEPTS GLDSAASYHV MNRIIKIAQQ DMRTIVASIH QPSSEVFELF DNLCLLSYGK TIYFGSSSKA NEFFAVNGFP CPYMRNPSDH YLRTINKDFD
301: DIEEGFGKNI ITSGKAIDTL VMSYESSEAC LNVRQKVLTI CQKNGRLLEN KGSQAGFITQ CKVLTQRSFI NMYRDLGYYW LRLLIYLALC LCIGTIFHEI
401: GSDYGSIQAR SSMLVFVVGF LTFMAIGGFP SFVEEMKLFT RERLNGHYGV GAFVIGNTLS STPFLLMISL VPGAVAYYLA DVQKGIDKFA YFVLMLFACM
501: MLVESLMMIV ASIVPDFLMG IITGAGIQGI MMLNGGFFRL PNELPMPIWK YPMYYLAFHK YAIQGFYKNE YETFTYFTKS GLAIIVTRDE ILRDIFQVEL
601: NYSKWGDIVI VFGMVILYRL IFLSIIKGKE KFRPMVRGFK YCCTT

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.