Factsheet for PGSC0003DMT400043270

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051530.2.1	Tomato	cytosol, peroxisome, plasma membrane	63.96	78.68
PGSC0003DMT400032669	Potato	mitochondrion	12.12	70.54
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	65.34	67.73
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	62.88	63.57
Os10t0163290-00	Rice	cytosol, endoplasmic reticulum, extracellular	24.54	62.99
GSMUA_AchrUn_...	Banana	plasma membrane	56.75	62.29
VIT_00s0625g00020.t01	Wine grape	plastid	69.63	61.27
GSMUA_AchrUn_...	Banana	plasma membrane	52.91	58.87
GSMUA_Achr6P04180_001	Banana	plasma membrane	53.22	58.71
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	54.6	56.6
GSMUA_Achr10P...	Banana	plasma membrane	36.04	56.22
TraesCS7B01G490700.1	Wheat	plastid	37.27	55.61
Os09t0472200-00	Rice	plasma membrane	59.97	54.61
VIT_00s0625g00050.t01	Wine grape	cytosol	53.53	54.28
TraesCS5B01G248000.1	Wheat	plasma membrane, plastid	60.58	54.11
Os09t0472100-01	Rice	plasma membrane	59.82	54.09
TraesCS5D01G257000.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	60.74	54.02
KXG35822	Sorghum	mitochondrion, nucleus, peroxisome, plasma membrane	60.74	53.95
TraesCS5B01G247700.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	60.58	53.89
TraesCS5A01G249900.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	60.58	53.89
TraesCS5D01G257400.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	60.43	53.75
TraesCS5B01G247800.1	Wheat	plasma membrane, plastid	60.43	53.75
OQU84078	Sorghum	cytosol, plasma membrane	47.39	53.74
TraesCS5D01G257100.2	Wheat	nucleus, peroxisome, plasma membrane, plastid	60.58	53.6
Zm00001d020811_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	59.97	53.12
HORVU5Hr1G070400.3	Barley	cytosol, peroxisome	60.43	52.19
TraesCS7B01G490800.1	Wheat	peroxisome	45.71	50.94
VIT_00s0989g00010.t01	Wine grape	plastid	68.56	50.17
TraesCS6A01G140300.2	Wheat	plastid	52.15	47.95
TraesCS2B01G128800.1	Wheat	plasma membrane	34.97	47.9
Os09t0250800-00	Rice	mitochondrion	53.53	47.16
TraesCS2D01G110700.1	Wheat	plastid	48.47	47.09
TraesCS2A01G110200.1	Wheat	plastid	48.47	47.09
TraesCS6D01G128600.1	Wheat	plastid	51.23	47.04
TraesCSU01G100600.1	Wheat	plastid	50.0	47.04
TraesCS6B01G168800.2	Wheat	plastid	51.23	46.98
KXG34927	Sorghum	plastid	50.15	46.78
TraesCS2D01G110800.1	Wheat	plastid	48.62	46.76
TraesCSU01G100800.1	Wheat	plastid	49.69	46.75
TraesCS2B01G128400.1	Wheat	plastid	48.47	46.75
Os12t0411700-01	Rice	plastid	51.07	46.7
KXG19944	Sorghum	plastid	52.15	46.7
TraesCS7A01G566200.1	Wheat	plasma membrane, plastid	49.39	46.6
HORVU2Hr1G018920.1	Barley	cytosol	36.35	46.38
HORVU6Hr1G027440.10	Barley	plastid	49.08	46.18
Zm00001d019398_P001	Maize	plastid	48.93	46.03
TraesCS4A01G308200.1	Wheat	plastid	49.08	45.78
Os07t0288700-02	Rice	plastid	51.07	45.68
Zm00001d048621_P001	Maize	plastid	50.15	45.42
Os12t0409700-00	Rice	cytosol, peroxisome, plasma membrane	29.29	44.94
HORVU2Hr1G019010.2	Barley	plasma membrane	28.83	44.87
TraesCS2B01G128700.1	Wheat	plastid	41.26	43.25
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	46.63	43.0
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	42.48	42.23
Os09t0125900-01	Rice	plastid	33.59	41.71
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	42.33	40.47
PGSC0003DMT400069344	Potato	plasma membrane	16.1	37.23
PGSC0003DMT400050589	Potato	plastid	33.59	30.29
PGSC0003DMT400031312	Potato	plastid	33.44	30.15
AT3G21080.1	Thale cress	cytosol, peroxisome, plasma membrane	9.36	23.92
PGSC0003DMT400031316	Potato	mitochondrion, plastid	22.39	13.62

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1BEC9
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400016797	PGSC:PGSC0003DMG400016797	EnsemblPlants:PGSC0003DMT400043270
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF229	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0002950B9B	:	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400016797]

Coordinates

chr5:+:46442609..46446926

Molecular Weight (calculated)

72467.3 Da

IEP (calculated)

7.944

GRAVY (calculated)

-0.107

Length

652 amino acids

Sequence
(BLAST)

001: MESQSNYVPK WTPSPNRSPH RRNESETNES VISEDIPNFN NINIPTKNFP FTPNIGSIEA PSLRVDSEIK RSIEVESTNY YEPPKQISVT NPMISNTNFG
101: YDDDVALSGK LINEGIYLTW KDLWVTVPDK KSGRRAILQG LTGYVQPGEV LAIMGPSGCG KSTLLDTLAG RLDSNTRQTG EILINGRRQS LAFGTSAYVT
201: QDDTLMTTLT VKEAIYYSAQ LQLPDSMSRS EKRDRAEQTI REMGLQDAMN TRIGGWSVKG LSGGQKRRVS ICIEILKRPK LLFLDEPTSG LDSAASYHVM
301: NKIVQLAKQD GRTIVASIHQ PSSEVFQLFH NLCLLSSGRI VYFGNISNAN EYFALNGFPC PTMRNPSDHY LRTINKDFDI DIEKGVGGKA TATEAIDILV
401: KSYKTSQGCQ QVQRKVSEIC QQSGGEEAKK GSQAGFVTQC MVLTRRSFVN MYRDLGYYWL RFAIYIALCL GVGTIFHDIG HDYGSIQARG SMLMFVAAFL
501: TFMAIGGFPS FVEDMKIFTR ERLNGHYGVA AYVVGNTFSS IPYLILISVV PGALAYYLVG LQKGFDHFAY FALVLFATMM LVESLMMIVA SIVPDFLMGI
601: ITGAGIQGVM MLNGGFFRLP NDLPKPFGST QCITLHFTNM QIKDFTRMNS WD

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.