Factsheet for PGSC0003DMT400039496

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g019760.2.1	Tomato	nucleus	98.59	98.17
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	85.86	86.1
KRH09311	Soybean	cytosol, peroxisome, plasma membrane	83.73	83.85
KRH38814	Soybean	cytosol, peroxisome, plasma membrane	83.59	83.59
GSMUA_Achr5P10800_001	Banana	cytosol, peroxisome, plasma membrane	80.91	82.54
AT1G17840.1	Thale cress	cytosol, peroxisome, plasma membrane	81.19	81.65
GSMUA_Achr5P19820_001	Banana	cytosol, peroxisome, plasma membrane	76.52	81.11
CDY26211	Canola	cytosol, peroxisome, plasma membrane	76.8	80.33
Bra025944.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.52	80.03
CDY19179	Canola	cytosol, peroxisome, plasma membrane	76.38	79.88
Bra016584.1-P	Field mustard	cytosol, peroxisome, plasma membrane	79.07	79.74
PGSC0003DMT400069344	Potato	plasma membrane	31.68	79.43
CDX96749	Canola	cytosol, peroxisome, plasma membrane	75.81	79.17
CDX83888	Canola	cytosol, peroxisome, plasma membrane	75.25	78.35
PGSC0003DMT400069337	Potato	cytosol, peroxisome, plastid	71.99	77.59
TraesCS1B01G181300.2	Wheat	cytosol, peroxisome, plasma membrane	78.36	77.37
TraesCS1D01G161500.2	Wheat	cytosol, peroxisome, plasma membrane	78.08	77.09
Os10t0494300-01	Rice	extracellular, plasma membrane	78.22	76.49
KXG38261	Sorghum	cytosol, peroxisome, plasma membrane	76.24	75.49
Os04t0528300-01	Rice	plasma membrane	75.39	74.96
Zm00001d013960_P001	Maize	cytosol, peroxisome, plasma membrane	75.25	74.93
Zm00001d002871_P001	Maize	cytosol, peroxisome, plasma membrane	76.1	74.62
TraesCSU01G020100.1	Wheat	plasma membrane	74.68	73.74
TraesCS2A01G374100.1	Wheat	plasma membrane	74.54	73.4
Zm00001d032601_P002	Maize	cytosol, peroxisome, plasma membrane	73.97	71.06
TraesCS1A01G164500.1	Wheat	cytosol	68.46	70.55
HORVU2Hr1G090960.2	Barley	cytosol	73.55	68.78
OQU82009	Sorghum	mitochondrion	75.67	68.59
TraesCS2D01G370400.2	Wheat	plastid	74.26	67.65
TraesCS1D01G150800.1	Wheat	cytosol, peroxisome, plasma membrane	67.47	66.25
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	51.91	53.81
PGSC0003DMT400032669	Potato	mitochondrion	8.49	53.57
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	46.11	51.83
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	47.24	51.78
PGSC0003DMT400043270	Potato	cytosol	43.0	46.63
PGSC0003DMT400050589	Potato	plastid	34.79	34.02
PGSC0003DMT400031312	Potato	plastid	34.37	33.61
PGSC0003DMT400031316	Potato	mitochondrion, plastid	23.76	15.67

Protein Annotations

EntrezGene:102600699	MapMan:21.9.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1B8D2	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG400015270
PGSC:PGSC0003DMG400015270	EnsemblPlants:PGSC0003DMT400039496	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF271
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296BD82	RefSeq:XP_006351519.1	SEG:seg

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400015270]

Coordinates

chr3:+:50323170..50327354

Molecular Weight (calculated)

79067.7 Da

IEP (calculated)

8.548

GRAVY (calculated)

0.078

Length

707 amino acids

Sequence
(BLAST)

001: MRNLSTSAND VMMEIEANKP QGHGIVVGGL SPLSETLWKE KTNTEFIGDV SARLAWKDLT VMVTLNSGET QNVLEGLTGY AEPGTFTALM GPSGSGKSTL
101: LDALSGRLAS NAFLSGRVLL NGRKANLSFG TAAYVTQDDT LIGTLTVRET ISYSARLRLP DRMPWSEKRT LIESTIIEMG LQDCADTVIG NWHLRGISGG
201: EKRRVSIALE ILMRPRLLFL DEPTSGLDSA SAFFVTQTLR GLSRDGRTVI ASIHQPSSEV FELFDRLYLL SGGKTVYFGQ ASEAYEFFAQ AGFPCPALRN
301: PSDHFLRCIN SDFDKVKATL KGSMKLRFES NEDPLDKTTT AEAIRILVDY YRRSQYSYSA NERVEEMSKV KGTVLDSGGS QASFFMQAYT LTKRSFVNMS
401: RDFGYYWLRL VIYLVVTICI GTIYLNVGTG YSSILARGAC ASFVFGFVTF MSIGGFPSFV EDMKVFQRER MNGHYGVFAF VVSNTLSAMP FLILITFLSG
501: TVCYFMVQLH PGFTHYLFFV ICLYASVTVV ESLMMVIASI VPNFLMGIII GAGIQGIFML VSGYFRLPND IPKPFWRYPM SYLSFHFWAL QGQYQNDLMG
601: LEFDNSSPDL PKISGEFILE QIFQIDLNRS KWVDVSVIFV MIITYRIIFF IMIKINEDVT PWIRGYIARR KMQQKNGNQK QTIAPYGLTQ SPSLRAYAGN
701: NGPNSNR

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.