Factsheet for Solyc03g019760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	98.17	98.59
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	86.06	86.67
KRH09311	Soybean	cytosol, peroxisome, plasma membrane	84.37	84.84
KRH38814	Soybean	cytosol, peroxisome, plasma membrane	84.23	84.58
GSMUA_Achr5P10800_001	Banana	cytosol, peroxisome, plasma membrane	81.27	83.26
AT1G17840.1	Thale cress	cytosol, peroxisome, plasma membrane	80.85	81.65
GSMUA_Achr5P19820_001	Banana	cytosol, peroxisome, plasma membrane	76.48	81.41
Solyc06g072090.1.1	Tomato	cytosol, plasma membrane, plastid	74.65	80.3
CDY26211	Canola	cytosol, peroxisome, plasma membrane	76.34	80.18
Bra025944.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.06	79.88
Bra016584.1-P	Field mustard	cytosol, peroxisome, plasma membrane	78.73	79.74
CDY19179	Canola	cytosol, peroxisome, plasma membrane	75.92	79.73
CDX96749	Canola	cytosol, peroxisome, plasma membrane	75.49	79.17
CDX83888	Canola	cytosol, peroxisome, plasma membrane	75.07	78.5
TraesCS1B01G181300.2	Wheat	cytosol, peroxisome, plasma membrane	78.31	77.65
TraesCS1D01G161500.2	Wheat	cytosol, peroxisome, plasma membrane	78.03	77.37
Os10t0494300-01	Rice	extracellular, plasma membrane	78.45	77.04
KXG38261	Sorghum	cytosol, peroxisome, plasma membrane	76.48	76.05
Solyc06g072100.1.1	Tomato	cytosol, peroxisome, plasma membrane	76.48	75.94
Os04t0528300-01	Rice	plasma membrane	75.77	75.67
Zm00001d013960_P001	Maize	cytosol, peroxisome, plasma membrane	75.49	75.49
Zm00001d002871_P001	Maize	cytosol, peroxisome, plasma membrane	76.62	75.45
TraesCSU01G020100.1	Wheat	plasma membrane	75.07	74.44
TraesCS2A01G374100.1	Wheat	plasma membrane	74.93	74.09
Zm00001d032601_P002	Maize	cytosol, peroxisome, plasma membrane	74.23	71.6
TraesCS1A01G164500.1	Wheat	cytosol	68.31	70.7
HORVU2Hr1G090960.2	Barley	cytosol	73.94	69.44
OQU82009	Sorghum	mitochondrion	76.2	69.36
TraesCS2D01G370400.2	Wheat	plastid	74.65	68.3
TraesCS1D01G150800.1	Wheat	cytosol, peroxisome, plasma membrane	67.46	66.53
Solyc01g105400.2.1	Tomato	cytosol, plastid	9.3	56.41
Solyc11g065350.1.1	Tomato	cytosol, peroxisome, plasma membrane	51.97	54.11
Solyc05g051530.2.1	Tomato	cytosol, peroxisome, plasma membrane	40.28	53.96
Solyc11g009100.1.1	Tomato	cytosol, peroxisome, plasma membrane	46.76	51.16
Solyc01g105450.2.1	Tomato	plasma membrane	44.79	50.72
Solyc11g065360.1.1	Tomato	cytosol, peroxisome, plasma membrane	48.03	49.56
Solyc06g074970.1.1	Tomato	plastid	28.73	33.89
Solyc11g069710.1.1	Tomato	plastid	34.23	33.61
Solyc04g025170.2.1	Tomato	mitochondrion	23.24	16.18
Solyc09g008000.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	24.51	15.95
Solyc06g075020.2.1	Tomato	plasma membrane	23.52	15.27
Solyc11g069820.1.1	Tomato	plasma membrane	23.24	15.1

Protein Annotations

MapMan:21.9.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0015245	GO:GO:0015908	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	UniProt:K4BEU8	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF271	SMART:SM00382
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g019760.2	EnsemblPlants:Solyc03g019760.2.1	TMHMM:TMhelix	UniParc:UPI000276871B	SEG:seg

Description

ABC transporter G family member 11 [Source:Projected from Arabidopsis thaliana (AT1G17840) UniProtKB/Swiss-Prot;Acc:Q8RXN0]

Coordinates

chr3:+:61400646..61404690

Molecular Weight (calculated)

79468.2 Da

IEP (calculated)

8.822

GRAVY (calculated)

0.066

Length

710 amino acids

Sequence
(BLAST)

001: MRNSSSSTTS ANDVMMEIEA NKPQGNGIVV GGLSPLSETL WKEKRNTEFI GDVSARLAWK DLTVMVTLNN GETQNVLEGL TGYAEPGTFT ALMGPSGSGK
101: STLLDALSGR LASNAFLSGR VLLNGRKANL SFGTAAYVTQ DDTLIGTLTV RETISYSARL RLPDRMPWLE KRTLIESTII EMGLQDCADT VIGNWHLRGI
201: SGGEKRRVSI ALEILMRPRL LFLDEPTSGL DSASAFFVTQ TLRGLSRDGR TVIASIHQPS SEVFELFDRL YLLSGGKTVY FGQASEAYEF FAQAGFPCPA
301: LRNPSDHFLR CINSDFDKVK ATLKGSMKLR FESNEDPLDK TTTAEAIRIL VDYYRRSQYS YSANERVEEM SKVKGTVLDS GGSQASFFMQ AYTLTKRSFV
401: NMSRDFGYYW LRLVIYLVVT ICIGTIYLNV GTGYSSILAR GACASFVFGF VTFMSIGGFP SFVEDMKVFQ RERMNGHYGV FAFVVSNTLS AMPFLILITF
501: LSGTVCYFMV RLHPGFTHYL FFVICLYASV TVVESLMMVI ASVVPNFLMG IIIGAGIQGI FMLVSGYFRL PNDIPKPFWR YPMSYLSFHF WALQGQYQND
601: LMGLEFDNSS PDLPKIPGEF ILEQIFQIDL NRSKWIDVSV IFVMIITYRI IFFIMIKINE DVTPWIRGYI ARRKMQQKNG NQKQTIAPYG LTQSPSLRAY
701: VGNNGPNSNR

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.