Factsheet for Solyc04g025170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
plasma membrane 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g04600.t01	Wine grape	plasma membrane	68.24	62.14
OQU76478	Sorghum	plasma membrane	22.35	60.0
GSMUA_Achr4P12050_001	Banana	mitochondrion, plasma membrane	60.88	58.97
KRH34842	Soybean	plasma membrane	64.22	58.69
KRH71703	Soybean	plasma membrane	64.02	58.67
KRG91932	Soybean	plasma membrane	64.12	58.65
CDY25855	Canola	plasma membrane	58.43	57.47
Bra038121.1-P	Field mustard	plasma membrane	58.73	56.83
CDY51880	Canola	plasma membrane	58.63	56.74
GSMUA_Achr4P05530_001	Banana	plasma membrane	55.88	56.72
CDY62076	Canola	plasma membrane	60.0	56.35
Bra039668.1-P	Field mustard	plasma membrane	60.0	56.35
CDY24100	Canola	plasma membrane	59.9	56.26
GSMUA_Achr11P...	Banana	plasma membrane	55.0	55.82
CDY62072	Canola	endoplasmic reticulum, golgi, plasma membrane	58.14	55.68
AT1G53390.1	Thale cress	plasma membrane	60.29	55.46
CDY24098	Canola	plasma membrane	57.75	55.31
GSMUA_Achr8P14250_001	Banana	plasma membrane	54.71	55.3
HORVU6Hr1G091510.2	Barley	mitochondrion	56.57	55.27
Solyc11g069820.1.1	Tomato	plasma membrane	59.02	55.08
Os06t0731200-01	Rice	plasma membrane	53.63	54.97
HORVU7Hr1G122580.37	Barley	endoplasmic reticulum, vacuole	47.25	54.96
Solyc09g008000.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	56.96	53.25
Os11t0416900-01	Rice	plasma membrane	57.45	53.22
TraesCS7B01G488900.1	Wheat	plasma membrane	55.29	53.16
TraesCSU01G106900.1	Wheat	plasma membrane	55.2	53.06
Solyc06g075020.2.1	Tomato	plasma membrane	56.76	52.92
Zm00001d046068_P001	Maize	plasma membrane	53.92	52.88
KXG31382	Sorghum	plasma membrane	56.96	52.63
Zm00001d018500_P002	Maize	plasma membrane	56.96	52.25
TraesCS6B01G434900.1	Wheat	plasma membrane	56.86	51.33
Os04t0194500-01	Rice	plasma membrane	52.45	50.23
Bra039669.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.51	49.16
TraesCS6D01G380300.1	Wheat	plasma membrane	56.57	48.12
KXG25878	Sorghum	plasma membrane	51.27	47.72
TraesCS2A01G049700.2	Wheat	plasma membrane	50.29	47.5
TraesCS2D01G048800.1	Wheat	plasma membrane	50.2	47.32
TraesCS2B01G060900.1	Wheat	plasma membrane	50.1	47.18
Zm00001d004335_P001	Maize	plasma membrane	50.59	47.17
Zm00001d025031_P001	Maize	plasma membrane	50.49	46.78
TraesCS6A01G395000.2	Wheat	plasma membrane, plastid	56.37	46.18
Solyc01g105400.2.1	Tomato	cytosol, plastid	4.22	36.75
Solyc06g072090.1.1	Tomato	cytosol, plasma membrane, plastid	15.29	23.64
Solyc01g105450.2.1	Tomato	plasma membrane	14.41	23.45
Solyc03g019760.2.1	Tomato	nucleus	16.18	23.24
Solyc11g065350.1.1	Tomato	cytosol, peroxisome, plasma membrane	15.49	23.17
Solyc11g009100.1.1	Tomato	cytosol, peroxisome, plasma membrane	14.51	22.8
Solyc06g074970.1.1	Tomato	plastid	13.04	22.09
Solyc06g072100.1.1	Tomato	cytosol, peroxisome, plasma membrane	15.39	21.96
Solyc05g051530.2.1	Tomato	cytosol, peroxisome, plasma membrane	10.78	20.75
Solyc11g065360.1.1	Tomato	cytosol, peroxisome, plasma membrane	13.73	20.35
Solyc11g069710.1.1	Tomato	plastid	14.12	19.92

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	UniProt:K4BQW2
InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF304
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g025170.2	EnsemblPlants:Solyc04g025170.2.1	TMHMM:TMhelix	UniParc:UPI0002765A15
SEG:seg	:	:	:	:	:

Description

ABC transporter G family member 24 [Source:Projected from Arabidopsis thaliana (AT1G53390) UniProtKB/Swiss-Prot;Acc:Q9MAG3]

Coordinates

chr4:+:25348513..25363075

Molecular Weight (calculated)

113134.0 Da

IEP (calculated)

8.670

GRAVY (calculated)

-0.130

Length

1020 amino acids

Sequence
(BLAST)

0001: MGNGRLKSRH KYRPGWWLGW SAPHWLRGIG ACCGDIQRRL CTSAEISSYF SNTITSGSNY LTPNRNCNLT SWVPGCEPGW ACSTNSDQNP DLRNSREMPA
0101: RTLACQACCE GFFCPHGLTC MIPCPLGSYC PLATLNRDTG ICEPYSYQLP PGQPSHTCGG ANIWSDVRSS SEVFCSAGSY CPTNTEENPC SSGNYCPTGS
0201: TAEKRCFKLT SCNPNTASQN IHAYGAMLIA ALATLLLIIY NCSDQIITVR ERRLARSREA AAKVVKEKIQ ARARWKSAKE AAKKHAVELQ GQFSRKFSRK
0301: RNITVSDKVT VLNEEYTDTD GNPYPLNEQS TSLVSNKSQS ASEVEEIGSS PLMTMINEIE EQTFDSSESF SLEIKERNLK TKKAKGKDIH THSQIFKYAY
0401: AQLEREKAQQ QQNNNLTFSG VISMATNTDY KKRPVIEIGF KDLTVTLKGK RKHLLRSVNG KIMPGRITSV MGPSGAGKTT LLSALAGKTV GCTISGSILI
0501: NGKSEPIRSY RKIVGFVPQD DIVHGNLTVE ENLWFSARCS VRGSLVGTVE KRGISGGQRK RVNVGLELVM EPSLLFLDEP TSGLDSSSSQ LLLRALRREA
0601: LEGVNICMVV HQPSYTLFNM FDDLILLAKG GLVVYHGPVK KVENYFAGHG IEVPERVNPP DYFIDILEGL VKPSTSSNVN YKELPVLWIL HNGYSVPPEM
0701: QQSAAALASS PVELNIDTQA IFDHVTEENS FAGEMWLDMK TNVERQRDII LHNFMRTKDL SNRRTPNVLL QYKYFIGRLG KQRLREAKMQ AIDYLILLVA
0801: GACLGSLTKV RDESFGAPGY THTIIAVSLL CKIAALRTFA LDKLQYWRES ASGISSIAHF VAKDTIDQFN TVIKPAVYLS MFYFFCNPRS SFADNYVVLL
0901: CLVYCVTGMG YTFAIFLAPG PSQLCSVLVP VVLTLIASRT DGGKFLKILV DLCYPKWALE AFVIANAERY YGVWLITRCG ALMNWGYSLH DWSLCLCILL
1001: LIGLGSRIIA FVGMLSFQRK

Best Arabidopsis Sequence Match ( AT5G60740.1 )
(BLAST)

0001: MGRRNSYFPG NFVPLFFVFI VLILQQERVI CQEDRSLDNP AANRLYNQFV FDKISNLTEV FEDDIKRELG FCITNVKEDY NEAFNFSTKP DFLNACGKTT
0101: KGDMMQRICT AAEVRIYFNG LLGGAKRATN YLKPNKNCNL SSWMSGCEPG WACRTAKDVK VDLKDDKNVP VRTQQCAPCC AGFFCPRGIT CMIPCPLGAY
0201: CPEANLNRTT GLCDPYHYQL PSGQPNHTCG GADIWADIGS SSEVFCSAGS FCPSTIDKLP CTKGHYCRTG STAELNCFKL ATCNPRSTNQ NITAYGIMLF
0301: AGLGFLLIIL YNCSDQVLAT RERRQAKSRE KAVQSVRDSQ SREKWKSAKD IAKKHATELQ QSFSRTFSRR KSMKQPDLMR GLSQAKPGSD AALPPMLGSS
0401: SDTKKGKKKE KNKLTEMLHD IEQNPEDPEG FNLEIGDKNI KKHAPKGKAL HTQSQMFRYA YGQIEKEKAM QEQNKNLTFS GVISMANDID IRKRPMIEVA
0501: FKDLSITLKG KNKHLMRCVT GKLSPGRVSA VMGPSGAGKT TFLTALTGKA PGCIMTGMIL VNGKVESIQS YKKIIGFVPQ DDIVHGNLTV EENLWFSARC
0601: RLPADLPKPE KVLVVERVIE SLGLQHVRDS LVGTVEKRGI SGGQRKRVNV GLEMVMEPSL LILDEPTSGL DSSSSQLLLR ALRREALEGV NICMVVHQPS
0701: YTLFRMFDDL ILLAKGGLIC YQGPVKKVEE YFSSLGIVVP ERVNPPDYYI DILEGILKPS TSSGVTYKQL PVRWMLHNGY PVPMDMLKSI EGMASSASGE
0801: NSAHGGSAHG SVVGDDGTSF AGEFWQDVKA NVEIKKDNLQ NNFSSSGDLS EREVPGVYQQ YRYFLGRLGK QRLREARTLA VDYLILLLAG ICLGTLAKVS
0901: DETFGAMGYT YTVIAVSLLC KITALRSFSL DKLHYWRESR AGMSSLAYFL AKDTVDHFNT IVKPLVYLSM FYFFNNPRST VTDNYVVLIC LVYCVTGIAY
1001: TLAILFEPGP AQLWSVLLPV VLTLIATSTN DNKIVDSISE LCYTRWALEA FVVSNAQRYK GVWLITRCGS LMENGYNIKH FPRCLVFLTL TGILSRCAAF
1101: FCMVTFQKK

Arabidopsis Description

ABCG28ABC transporter G family member 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF46]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.