Factsheet for VIT_13s0019g04600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
golgi 4
plasma membrane 7
endoplasmic reticulum 5
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01620.t01	Wine grape	cytosol	71.61	72.06
KRH34842	Soybean	plasma membrane	71.79	72.04
KRG91932	Soybean	plasma membrane	71.7	72.02
KRH71703	Soybean	plasma membrane	70.09	70.53
GSMUA_Achr4P12050_001	Banana	mitochondrion, plasma membrane	64.73	68.85
VIT_06s0004g02490.t01	Wine grape	plasma membrane	67.05	68.33
Solyc04g025170.2.1	Tomato	mitochondrion	62.14	68.24
GSMUA_Achr4P05530_001	Banana	plasma membrane	59.91	66.77
CDY25855	Canola	plasma membrane	61.61	66.54
OQU76478	Sorghum	plasma membrane	22.41	66.05
Bra038121.1-P	Field mustard	plasma membrane	62.05	65.94
CDY51880	Canola	plasma membrane	62.05	65.94
CDY24100	Canola	plasma membrane	63.48	65.47
CDY62076	Canola	plasma membrane	63.39	65.38
Bra039668.1-P	Field mustard	plasma membrane	63.39	65.38
AT1G53390.1	Thale cress	plasma membrane	63.66	64.29
CDY62072	Canola	endoplasmic reticulum, golgi, plasma membrane	60.18	63.29
CDY24098	Canola	plasma membrane	59.82	62.91
Os06t0731200-01	Rice	plasma membrane	55.8	62.81
GSMUA_Achr8P14250_001	Banana	plasma membrane	55.8	61.94
Os11t0416900-01	Rice	plasma membrane	60.36	61.4
HORVU6Hr1G091510.2	Barley	mitochondrion	56.96	61.11
GSMUA_Achr11P...	Banana	plasma membrane	54.73	60.99
Zm00001d046068_P001	Maize	plasma membrane	56.25	60.58
HORVU7Hr1G122580.37	Barley	endoplasmic reticulum, vacuole	46.79	59.75
TraesCSU01G106900.1	Wheat	plasma membrane	56.43	59.57
KXG31382	Sorghum	plasma membrane	58.48	59.33
TraesCS7B01G488900.1	Wheat	plasma membrane	56.07	59.19
Zm00001d018500_P002	Maize	plasma membrane	58.75	59.17
TraesCS6B01G434900.1	Wheat	plasma membrane	57.5	56.99
Os04t0194500-01	Rice	plasma membrane	53.39	56.15
Bra039669.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.61	56.06
TraesCS6D01G380300.1	Wheat	plasma membrane	57.86	54.05
TraesCS2D01G048800.1	Wheat	plasma membrane	52.14	53.97
KXG25878	Sorghum	plasma membrane	52.77	53.92
TraesCS2B01G060900.1	Wheat	plasma membrane	52.05	53.83
TraesCS2A01G049700.2	Wheat	plasma membrane	51.88	53.8
Zm00001d025031_P001	Maize	plasma membrane	52.32	53.22
Zm00001d004335_P001	Maize	plasma membrane	51.61	52.83
TraesCS6A01G395000.2	Wheat	plasma membrane, plastid	57.59	51.81
VIT_06s0061g00250.t01	Wine grape	cytosol	9.64	30.51
VIT_06s0009g00530.t01	Wine grape	mitochondrion	4.55	27.42
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	15.27	24.26
VIT_06s0061g00260.t01	Wine grape	cytosol	14.64	24.05
VIT_03s0017g01290.t01	Wine grape	cytosol	13.57	23.6
VIT_03s0017g01320.t01	Wine grape	plasma membrane	13.57	23.57
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	13.21	23.53
VIT_06s0061g00230.t01	Wine grape	plasma membrane	12.77	22.99
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	13.84	22.93
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	13.75	22.85
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	14.38	22.15
VIT_00s0625g00020.t01	Wine grape	plastid	14.02	21.19
VIT_06s0061g00350.t01	Wine grape	plastid	13.57	21.05
VIT_00s0989g00010.t01	Wine grape	plastid	15.0	18.86
VIT_00s0625g00050.t01	Wine grape	cytosol	10.62	18.51
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	2.95	13.58

Protein Annotations

EntrezGene:100244471	wikigene:100244471	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	ProteinID:CCB56162	ProteinID:CCB56162.1	ncoils:Coil	UniProt:F6HNE3	EMBL:FN595998
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
EntrezGene:LOC100244471	wikigene:LOC100244471	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF304	SMART:SM00382	SUPFAM:SSF52540	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000198487C	ArrayExpress:VIT_13s0019g04600	EnsemblPlantsGene:VIT_13s0019g04600	EnsemblPlants:VIT_13s0019g04600.t01	unigene:Vvi.14788	RefSeq:XP_002271552
RefSeq:XP_002271552.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:6030548..6044517

Molecular Weight (calculated)

124396.0 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.083

Length

1120 amino acids

Sequence
(BLAST)

0001: MRRERVGAYC PSPAPTFVVL IILLVGSVQF VQCQNVDDYS EFDNPELLPL FTQLVYGQIS NMTTMLSAEF QNRSSFCVKD PDADWNQAFN YSFNLDFLAS
0101: CIQKTKGDIT RRLCTSAETK FYFSNFFLKS ESSNYLRPNK NCNLTTWVSG CEPGWACSVG QNQQVNLKNS QNIPTRTHDC QACCEGFFCP RGITCMIPCP
0201: LGSYCPLARV NKTTGVCEPY LYQLPPGQPN HTCGGANIWA DVGSSGEVFC SSGSYCPTTT QKIPCSDGHY CRMGSTSEKR CFKLASCNPN TANQNIHAYG
0301: AMLIAALSTL LLIIYNCSGQ VLTTRERRQA KTREAAARSA RETTRAREKW KAAKDAAKRR AVGLQAHLSR TFSRKKYVTN SEELRILGQD KPVTDDDILS
0401: PMHISASGAS QLSSVAAKGK EKEPSELAKM MHVLDDDLDS FERFNLENGD KNSKKHMPKG KEIHTHSQIF KYAYAQLEKE KALQQENKDL TFSGVISMAT
0501: DTRIKKRPLI EVAFRDLTLT LKGKNKHLLR CVTGKIMPGR ITAVMGPSGA GKTTFISALA GKAIGCRMAG LILINGVNES IHSYKKIMGF VPQDDIVHGN
0601: LTVEENLWFS ARCRLSMDLP KAEKVLVIER VIESLGLQAV RDSLVGTVEK RGISGGQRKR VNVGLEMVME PSLLILDEPT SGLDSSSSQL LLKALRREAL
0701: EGVNICMVVH QPSFALFKMF EDLVLLAKGG LTVYHGPVKK VEEYFAGLGI NVPERVNPPD HFIDILEGLV KPSTSSGVSY SDLPIRWMLH KGYPVPPDMQ
0801: ENAAGLTMPS MGVNPVNGTN SDGAGTEDKS FAGELWQDVK CNVELHRDNI RHNFLKSNDL SNRRTPGVFL QYKYFLGRVA KQRLREARIQ VIDYLILLLA
0901: GACLGSIAKV SDETFGALGY TYTIIAVSLL CKIAALRSFS LEKLQYWRES ASGISSLAYF LSKDTIDLFN TIIKPVVYLS MFYFFNNPRS SFSDNYIVLI
1001: CLVYCVTGIA YMLAIFLEPG PAQLCSVLLP VVLTLIATRT GESKILKNLA NFCYPKWALE AFVIANAERY YGVWLITRCG SLLKSGYNLH DWDLCIFILI
1101: LIGIVCRAIA FTGMVTFRRK

Best Arabidopsis Sequence Match ( AT5G60740.1 )
(BLAST)

0001: MGRRNSYFPG NFVPLFFVFI VLILQQERVI CQEDRSLDNP AANRLYNQFV FDKISNLTEV FEDDIKRELG FCITNVKEDY NEAFNFSTKP DFLNACGKTT
0101: KGDMMQRICT AAEVRIYFNG LLGGAKRATN YLKPNKNCNL SSWMSGCEPG WACRTAKDVK VDLKDDKNVP VRTQQCAPCC AGFFCPRGIT CMIPCPLGAY
0201: CPEANLNRTT GLCDPYHYQL PSGQPNHTCG GADIWADIGS SSEVFCSAGS FCPSTIDKLP CTKGHYCRTG STAELNCFKL ATCNPRSTNQ NITAYGIMLF
0301: AGLGFLLIIL YNCSDQVLAT RERRQAKSRE KAVQSVRDSQ SREKWKSAKD IAKKHATELQ QSFSRTFSRR KSMKQPDLMR GLSQAKPGSD AALPPMLGSS
0401: SDTKKGKKKE KNKLTEMLHD IEQNPEDPEG FNLEIGDKNI KKHAPKGKAL HTQSQMFRYA YGQIEKEKAM QEQNKNLTFS GVISMANDID IRKRPMIEVA
0501: FKDLSITLKG KNKHLMRCVT GKLSPGRVSA VMGPSGAGKT TFLTALTGKA PGCIMTGMIL VNGKVESIQS YKKIIGFVPQ DDIVHGNLTV EENLWFSARC
0601: RLPADLPKPE KVLVVERVIE SLGLQHVRDS LVGTVEKRGI SGGQRKRVNV GLEMVMEPSL LILDEPTSGL DSSSSQLLLR ALRREALEGV NICMVVHQPS
0701: YTLFRMFDDL ILLAKGGLIC YQGPVKKVEE YFSSLGIVVP ERVNPPDYYI DILEGILKPS TSSGVTYKQL PVRWMLHNGY PVPMDMLKSI EGMASSASGE
0801: NSAHGGSAHG SVVGDDGTSF AGEFWQDVKA NVEIKKDNLQ NNFSSSGDLS EREVPGVYQQ YRYFLGRLGK QRLREARTLA VDYLILLLAG ICLGTLAKVS
0901: DETFGAMGYT YTVIAVSLLC KITALRSFSL DKLHYWRESR AGMSSLAYFL AKDTVDHFNT IVKPLVYLSM FYFFNNPRST VTDNYVVLIC LVYCVTGIAY
1001: TLAILFEPGP AQLWSVLLPV VLTLIATSTN DNKIVDSISE LCYTRWALEA FVVSNAQRYK GVWLITRCGS LMENGYNIKH FPRCLVFLTL TGILSRCAAF
1101: FCMVTFQKK

Arabidopsis Description

ABCG28ABC transporter G family member 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF46]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.