Factsheet for VIT_03s0017g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01290.t01	Wine grape	cytosol	80.33	84.32
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	77.96	78.19
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	66.27	71.22
Solyc01g105400.2.1	Tomato	cytosol, plastid	11.98	69.23
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	63.02	67.73
Solyc01g105450.2.1	Tomato	plasma membrane	62.43	67.3
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	24.11	67.08
VIT_03s0017g01320.t01	Wine grape	plasma membrane	62.13	65.12
VIT_06s0009g00530.t01	Wine grape	mitochondrion	17.6	63.98
VIT_00s0625g00020.t01	Wine grape	plastid	68.05	62.08
VIT_00s0625g00050.t01	Wine grape	cytosol	52.81	55.52
VIT_00s0989g00010.t01	Wine grape	plastid	67.16	50.95
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	49.11	47.09
VIT_06s0061g00230.t01	Wine grape	plasma membrane	42.6	46.3
VIT_06s0061g00260.t01	Wine grape	cytosol	44.82	44.43
VIT_06s0061g00250.t01	Wine grape	cytosol	22.93	43.79
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.6	39.61
VIT_06s0061g00350.t01	Wine grape	plastid	35.95	33.66
VIT_06s0004g02490.t01	Wine grape	plasma membrane	22.78	14.01
VIT_13s0019g04600.t01	Wine grape	plasma membrane	22.93	13.84
VIT_08s0040g01620.t01	Wine grape	cytosol	22.63	13.75

Protein Annotations

EntrezGene:100244406	wikigene:100244406	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM448135	ProteinID:CAN60999	ProteinID:CAN60999.1	ProteinID:CCB58010
ProteinID:CCB58010.1	UniProt:F6HTK0	EMBL:FN596248	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100244406	wikigene:LOC100244406	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF301
SMART:SM00382	SUPFAM:SSF52540	TIGR:TC58170	TMHMM:TMhelix	UniParc:UPI00015CCE40	ArrayExpress:VIT_03s0017g01280
EnsemblPlantsGene:VIT_03s0017g01280	EnsemblPlants:VIT_03s0017g01280.t01	unigene:Vvi.8944	RefSeq:XP_002270647	RefSeq:XP_002270647.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:17161781..17167061

Molecular Weight (calculated)

74610.1 Da

IEP (calculated)

8.474

GRAVY (calculated)

0.033

Length

676 amino acids

Sequence
(BLAST)

001: MAASALQSSP SHFEIECDSA SMQSHNPKTR KPREVVGSDG EDGGVFLTWE DLWVTVSNGK SGCRSILQGL TGYARPGEVL AIMGPSGCGK STLLDALAGR
101: LGSNTSQSGI ILVNGHKQAL SYGTSAYVTQ DDTLITTLTV GEAVYYSALL QLPDSMSKSE KKERADMTIR EMGLQDSINT RIGGWGVKGI SGGQKRRVSI
201: CIEILTHPKL LFLDEPTSGL DSAASYYVMS RIAGLDRQHG RTIITSIHQP SSEVFALFNN LCLLSSGRTV YFGPAHGADE FFSSNGFPCP THQNPSDHFL
301: KTINKDFEED IEQGFGGKKS KEEAIDILTK AYKSSDNFQQ VQTQVSEIYK QDGGALKKRS HASFLNQCLV LTRRSFVNMY RDLGYYWLRL AIYVALTVAL
401: GTIFHNVGYS NSSIKDRGSM LMYVASFLTF MSIGGFPSFV EDMKVFGRER LNGHYGSSSF LVGNTLSSVP YLLVISLIPG AIAYFLTGLQ KEYAHFIYYA
501: LVLFTCMMLV ESLMMIVASV VPNFLMGIIT GAGIQGLLIL GGGFFRLPND LPNVFWRYPL YYISFNRYAY QGLYKNEFLG LTFPSNIAGG PRVITGEEVL
601: RETWQMEMAY SKWVDLSILI GMVVLYRFLF FIFIKTTEKV IPTVKAFMSR PPKQTKQVMA NPFATPSATP LHGASI

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.