Factsheet for VIT_03s0017g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01290.t01	Wine grape	cytosol	75.37	78.88
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	78.19	77.96
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	64.69	69.32
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	24.04	66.67
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	61.72	66.14
Solyc01g105400.2.1	Tomato	cytosol, plastid	11.42	65.81
Solyc01g105450.2.1	Tomato	plasma membrane	61.13	65.71
VIT_03s0017g01320.t01	Wine grape	plasma membrane	61.87	64.65
VIT_00s0625g00020.t01	Wine grape	plastid	66.32	60.32
VIT_06s0009g00530.t01	Wine grape	mitochondrion	16.62	60.22
VIT_00s0625g00050.t01	Wine grape	cytosol	52.37	54.9
VIT_00s0989g00010.t01	Wine grape	plastid	66.77	50.51
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.22	46.1
VIT_06s0061g00250.t01	Wine grape	cytosol	24.04	45.76
VIT_06s0061g00230.t01	Wine grape	plasma membrane	42.14	45.66
VIT_06s0061g00260.t01	Wine grape	cytosol	45.7	45.16
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	43.32	40.17
VIT_06s0061g00350.t01	Wine grape	plastid	35.61	33.24
VIT_06s0004g02490.t01	Wine grape	plasma membrane	23.15	14.19
VIT_08s0040g01620.t01	Wine grape	cytosol	23.29	14.11
VIT_13s0019g04600.t01	Wine grape	plasma membrane	22.85	13.75

Protein Annotations

EntrezGene:100252948	wikigene:100252948	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB58012	ProteinID:CCB58012.1	UniProt:F6HTK2	EMBL:FN596248
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
EntrezGene:LOC100252948	wikigene:LOC100252948	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF301	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI0002108E8B	ArrayExpress:VIT_03s0017g01300	EnsemblPlantsGene:VIT_03s0017g01300	EnsemblPlants:VIT_03s0017g01300.t01	RefSeq:XP_002270397	RefSeq:XP_002270397.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:17193257..17218628

Molecular Weight (calculated)

74157.7 Da

IEP (calculated)

8.111

GRAVY (calculated)

0.015

Length

674 amino acids

Sequence
(BLAST)

001: MASSSFRPSV SDSEIVYGSA SLQSHRRETR KPLEVESVPS PNSREVGGGV SEEGGVYLTW ENLWVTVSNG KGGSRSILQD LTGYARPGEV LAIMGPSGCG
101: KSTLLDALAG RLEANQSGSI LVNGRKQTLA YGTSAYVTQD DTLLTTLTVG EAVYYSAQLQ LPDSMSKQEK KERADMTIKE MGLQDSINTR IGGWGAKGIS
201: GGQKRRVSIC VEILTHPNLL FLDEPTSGLD SAASYYVMSR IAGPDFRHGR TIITSIHQPS SEVFALFDNL CLLSSGRTVY FGPARAANEL FSRNGFPCPT
301: LQNPSDHFLK TINKDFEEDI EQGLGGKKPK EEVIDILIKA YKSSGSCQQV QAQVTEICKQ EGDQALQKSR DHAGFVNQCL ILTKRSYVNM SRDLGYYWMR
401: LGVYIMVSFA LGTIFYDLGF SNSSIQDRGS MLMFVASFLT FMSIGGFPSF VEDMKVFGRE RLNGHYGTGA FVVGNTLSSV PFLLLISLIP GAIAYYLAGL
501: QKGCEYFIYY ALVLFACMML VESIMMIVAS LVPNFLVGII TGAGIQGLLI LSGGFFRLPD NLPNILWRYP LYYVSFNRYA YQGMYKNEFT GLTFPGDQSG
601: GPATISGEEI LRKRWQVEMG YSKWVDLAIL VGMIALYRLL FLIIIKTTEK VMPLIKAFMS RPPKHTNQAL AAHS

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.