Factsheet for VIT_06s0061g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g00250.t01	Wine grape	cytosol	37.0	75.99
VIT_06s0061g00230.t01	Wine grape	plasma membrane	58.6	68.49
VIT_06s0061g00260.t01	Wine grape	cytosol	62.72	66.86
KRH66902	Soybean	cytosol	23.93	59.18
GSMUA_Achr4P00390_001	Banana	plasma membrane	49.38	58.0
Zm00001d010426_P001	Maize	plastid	53.09	55.94
EES19248	Sorghum	cytosol, peroxisome, plasma membrane	52.82	55.81
Os05t0222200-01	Rice	nucleus, peroxisome, plasma membrane	52.68	54.71
TraesCS1A01G126900.1	Wheat	nucleus, peroxisome, plasma membrane	51.44	54.28
TraesCS1D01G126600.1	Wheat	nucleus, peroxisome, plasma membrane	51.44	54.28
TraesCS1B01G147700.1	Wheat	nucleus, peroxisome, plasma membrane	51.44	54.28
HORVU1Hr1G030200.1	Barley	nucleus, peroxisome, plasma membrane	51.17	53.99
KRH66901	Soybean	plasma membrane	31.64	53.0
KRH66900	Soybean	plasma membrane	46.35	50.98
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.18	48.65
VIT_03s0017g01290.t01	Wine grape	cytosol	40.3	45.5
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	39.34	45.47
VIT_03s0017g01320.t01	Wine grape	plasma membrane	38.79	43.72
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	40.17	43.32
GSMUA_Achr4P00380_001	Banana	plastid	48.69	42.7
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	39.61	42.6
KRH66903	Soybean	extracellular	7.29	41.73
VIT_00s0625g00020.t01	Wine grape	plastid	40.72	39.95
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	13.34	39.92
VIT_00s0625g00050.t01	Wine grape	cytosol	33.7	38.1
VIT_06s0009g00530.t01	Wine grape	mitochondrion	9.22	36.02
VIT_00s0989g00010.t01	Wine grape	plastid	40.85	33.33
VIT_06s0061g00350.t01	Wine grape	plastid	30.26	30.47
KRG95235	Soybean	plasma membrane	45.8	29.71
VIT_06s0004g02490.t01	Wine grape	plasma membrane	23.38	15.47
VIT_08s0040g01620.t01	Wine grape	cytosol	22.42	14.65
VIT_13s0019g04600.t01	Wine grape	plasma membrane	22.15	14.38

Protein Annotations

EntrezGene:100244768	wikigene:100244768	MapMan:21.9.4.2	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB44246	ProteinID:CCB44246.1	UniProt:F6GWB1
EMBL:FN594957	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	EntrezGene:LOC100244768	wikigene:LOC100244768	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF338	SMART:SM00382	SUPFAM:SSF52540
TIGR:TC64621	TMHMM:TMhelix	UniParc:UPI000210A8F3	ArrayExpress:VIT_06s0061g00240	EnsemblPlantsGene:VIT_06s0061g00240	EnsemblPlants:VIT_06s0061g00240.t01
unigene:Vvi.14000	RefSeq:XP_003632263	RefSeq:XP_003632263.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:17503122..17519101

Molecular Weight (calculated)

80127.9 Da

IEP (calculated)

9.249

GRAVY (calculated)

0.105

Length

727 amino acids

Sequence
(BLAST)

001: MAGIDGLELD HMLDINSGLS SFTLQQNILC RSMEIEVEGD NGGGGDGGGV GGNGGGDHDH RRLVAYLVWE DLTVVVPSFR GGATRRLLHG VTGYAEPGRI
101: MAVMGPSGSG KSTLLDSLAG RLSRNVIMTG SVRINGQRRL HGGIAYVTQH DVLLGTLTVK ETMTYSAHLR LPTTMTKEEV NGIVEETILE MGLQNCANGF
201: IGNWHIRGIS GGEKKRLSIA LEILTQPRLL FLDEPTSGLD SASAYFIIQT LKNTACNGRT VISSIHQPSS EVFALFDHLL LLSGGETVYH GEAKRAVEFF
301: AEAGFPCPSR RNPSDHFLRC INSSFDTIRN TSMGSHKPHS QEIKKLSDPL MNMATADIKA TLVEKYKCSK YATKARSRIR EISVIDGLEI EKKGGSQAGW
401: QKQLLILTQR SFVNMSRDAG YYWIRILVYT VLSICVGTVF YDVGASTGYT AIMSRVNCGG FITGFMTIMA VGGFPSFIEE IKVFNRERLN RHYGNAVYIV
501: SNFLSSFPFL FVTSFATITI VFFMGKIRSG FNYYIYLCLV LLSCMATVES CMMVVASLVP NYMMGIVVGV GFSGIMMLAS GYYRSLDDIP KPFLRYPISY
601: ISFMAWAVQG VYKNLLLGLE FDPIIPGTPK LKGEVVLRTM LGIPLSHSKW WDLTAILVIF ISYRLLFLVI AKLKERASPL FWTLHANKIL QHLDKKSSVK
701: KKPSCPSKRH HPPHSLSSQE GLSSPLA

Best Arabidopsis Sequence Match ( AT3G21090.1 )
(BLAST)

001: MELEGSSSGR RQLPSKLEMS RGAYLAWEDL TVVIPNFSDG PTRRLLQRLN GYAEPGRIMA IMGPSGSGKS TLLDSLAGRL ARNVVMTGNL LLNGKKARLD
101: YGLVAYVTQE DVLLGTLTVR ETITYSAHLR LPSDMSKEEV SDIVEGTIME LGLQDCSDRV IGNWHARGVS GGERKRVSIA LEILTRPQIL FLDEPTSGLD
201: SASAFFVIQA LRNIARDGRT VISSVHQPSS EVFALFDDLF LLSSGESVYF GEAKSAVEFF AESGFPCPKK RNPSDHFLRC INSDFDTVTA TLKGSQRIQE
301: TPATSDPLMN LATSVIKARL VENYKRSKYA KSAKSRIREL SNIEGLEMEI RKGSEATWWK QLRTLTARSF INMCRDVGYY WTRIISYIVV SISVGTIFYD
401: VGYSYTSILA RVSCGGFITG FMTFMSIGGF PSFLEEMKVF YKERLSGYYG VSVYILSNYI SSFPFLVAIS VITGTITYNL VKFRPGFSHY AFFCLNIFFS
501: VSVIESLMMV VASVVPNFLM GLITGAGLIG IIMMTSGFFR LLPDLPKIFW RYPVSYISYG SWAIQGGYKN DFLGLEFEPL FPGEPKMTGE EVIEKVFGVK
601: VTYSKWWDLA AVVAILVCYR LLFFVVLKLR ERAGPALKAI QAKRTMRNLD RRPSFKRMPS LSLSLSSMSS RRHQPLRSLS SQEGLNSPIH Y

Arabidopsis Description

ABCG15ABC transporter G family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWI9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.