Factsheet for VIT_00s0989g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	60.16	85.21
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	23.12	84.77
VIT_00s0625g00020.t01	Wine grape	plastid	67.56	81.24
Solyc05g051530.2.1	Tomato	cytosol, peroxisome, plasma membrane	46.35	77.92
VIT_00s0625g00050.t01	Wine grape	cytosol	53.87	74.65
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	50.62	69.92
Solyc11g009100.1.1	Tomato	cytosol, peroxisome, plasma membrane	50.39	69.18
VIT_03s0017g01290.t01	Wine grape	cytosol	49.94	69.1
VIT_03s0017g01320.t01	Wine grape	plasma membrane	49.83	68.84
PGSC0003DMT400043270	Potato	cytosol	50.17	68.56
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	50.95	67.16
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	50.51	66.77
VIT_06s0009g00530.t01	Wine grape	mitochondrion	13.36	63.98
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	39.28	49.65
VIT_06s0061g00230.t01	Wine grape	plasma membrane	34.01	48.71
VIT_06s0061g00260.t01	Wine grape	cytosol	34.79	45.45
VIT_06s0061g00250.t01	Wine grape	cytosol	17.73	44.63
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	33.33	40.85
VIT_06s0061g00350.t01	Wine grape	plastid	28.51	35.18
VIT_06s0004g02490.t01	Wine grape	plasma membrane	18.86	15.29
VIT_13s0019g04600.t01	Wine grape	plasma membrane	18.86	15.0
VIT_08s0040g01620.t01	Wine grape	cytosol	18.52	14.82

Protein Annotations

EntrezGene:100262864	wikigene:100262864	EntrezGene:100852907	wikigene:100852907	EntrezGene:100854264	wikigene:100854264
MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
EMBL:AM481178	ProteinID:CAN81791	ProteinID:CAN81791.1	ProteinID:CBI35723	ProteinID:CBI35723.3	UniProt:D7TYZ7
EMBL:FN596310	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR020846	EntrezGene:LOC100262864	wikigene:LOC100262864	EntrezGene:LOC100852907	wikigene:LOC100852907
EntrezGene:LOC100854264	wikigene:LOC100854264	InterPro:MFS_dom	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF229	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI00015CD5CA	ArrayExpress:VIT_00s0989g00010	EnsemblPlantsGene:VIT_00s0989g00010	EnsemblPlants:VIT_00s0989g00010.t01	RefSeq:XP_002267117
RefSeq:XP_002267117.2	RefSeq:XP_003635439	RefSeq:XP_003635439.1	RefSeq:XP_003635454	RefSeq:XP_003635454.1	SEG:seg

Description

No Description!

Coordinates

chrUn:+:37387959..37392554

Molecular Weight (calculated)

98923.1 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.253

Length

891 amino acids

Sequence
(BLAST)

001: METTIQVPRW TPTPSPTSSP RGPNVPRWAP SPSPPSSPKR AMKSESFESN PPSSQGGNQV PRWNPNEPNT SSPRGYMQNE SFEPSSTKGT HLPKWNQSPS
101: RPSSPKRQIR DENFDELEMG THLPTWTQNL IPPSSPKGAM KNESLELSPP SSPRASHVPR WTPSPSPSRS PKGPSRNESF DDLERGSVAS EEDMSSDMEK
201: FFPFNSDSIS TSTRPPLDSL LLEAPSLRNL PKVKTSSQKP DVEQPKQNKN NVTRNIDMDF TSKSNGVFLT WKDLWVTVPD QQSGRRPILQ RLTGYAQPGE
301: VLAIMGPSGC GKSTLLDALA GRLGSNTRQA GEILINGRKQ RLAFGTSAYV TQDDTLMTTL TVREAVHYSA QLQLPGSMPT SAKKERAEMT ICEMGLQDCI
401: ETRIGGWGKK GLSGGQKRRV SICIEILTRP KLLFLDEPTS GLDSAASYHV MDRIVKLAHR EGITVIASIH QPSSEVFELF HNLCLLSSGK TVYFGPASMA
501: NEFFAKNGFP CPSLRNPSDH YLRTINKDFD LDIEEGLGGA TSTEEAINIL VRAYKSSETC QQVQGRVSEI CQQKGGVLEK KGSQASFATQ CLVLTKRSFV
601: NMYRDLGYYW LRLAIYIALC LCVGTIFYDI GFSYGSIQAR GSMLMFVAAF LTFMAIGGFP SFVEDMKIFG RERLNGHYGV GAFVIGNSLS SIPYLLMISL
701: IPGAIAYYLV HLQKGFEHFV YFAILLFVCM MLVESLMMMV ASIVPDFLMG IITGAGIQGV MMLCGGFFRL PNDLPNPFWK YPMYYIAFHK YANQGFYKNE
801: FEGLTFPNNQ VGGAPTITGE EILQNVWQVE MGYSKWIDLA ILFGMVVLYR LMFLGIIKTV EKVKPMIRGL FAVPPEKSKQ ILEDPIDPQY A

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.