Factsheet for VIT_00s0625g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 2
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.66	99.59
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	83.81	98.73
Solyc05g051530.2.1	Tomato	cytosol, peroxisome, plasma membrane	57.22	80.0
VIT_06s0009g00530.t01	Wine grape	mitochondrion	18.49	73.66
PGSC0003DMT400041814	Potato	cytosol, peroxisome, plasma membrane	61.67	70.85
VIT_03s0017g01290.t01	Wine grape	cytosol	61.27	70.5
Solyc11g009100.1.1	Tomato	cytosol, peroxisome, plasma membrane	61.27	69.95
PGSC0003DMT400043270	Potato	cytosol	61.27	69.63
VIT_03s0017g01320.t01	Wine grape	plasma membrane	59.78	68.68
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	62.08	68.05
VIT_00s0989g00010.t01	Wine grape	plastid	81.24	67.56
VIT_00s0625g00050.t01	Wine grape	cytosol	57.62	66.41
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	60.32	66.32
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.91	50.35
VIT_06s0061g00230.t01	Wine grape	plasma membrane	40.49	48.23
VIT_06s0061g00260.t01	Wine grape	cytosol	42.38	46.04
VIT_06s0061g00250.t01	Wine grape	cytosol	21.32	44.63
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	39.95	40.72
VIT_06s0061g00350.t01	Wine grape	plastid	34.68	35.6
VIT_06s0004g02490.t01	Wine grape	plasma membrane	21.46	14.47
VIT_08s0040g01620.t01	Wine grape	cytosol	21.46	14.29
VIT_13s0019g04600.t01	Wine grape	plasma membrane	21.19	14.02

Protein Annotations

EntrezGene:100261064	wikigene:100261064	EntrezGene:100852871	wikigene:100852871	MapMan:24.1.3.2.2	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB50169	ProteinID:CCB50169.1
UniProt:F6HD74	EMBL:FN595556	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100261064	wikigene:LOC100261064	EntrezGene:LOC100852871	wikigene:LOC100852871
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF229	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000210A704	ArrayExpress:VIT_00s0625g00020
EnsemblPlantsGene:VIT_00s0625g00020	EnsemblPlants:VIT_00s0625g00020.t01	unigene:Vvi.16034	RefSeq:XP_002269388	RefSeq:XP_002269388.2	RefSeq:XP_003635438
RefSeq:XP_003635438.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:33154410..33158014

Molecular Weight (calculated)

82147.6 Da

IEP (calculated)

6.866

GRAVY (calculated)

0.023

Length

741 amino acids

Sequence
(BLAST)

001: MESQVYVPRW APGPSPTTSP PKEAMKSERV DDLETGSIVS EEDRSSTMGR LFPFSVASIS DNTGPPPHSD IHELPSLRIE SNLITSLQTE LGLQHNGVEN
101: FFTCNDIGLN GVFLTWKDLW VTVSDDESGR RAILQGLAGY AQPGEVLAIM GPSGCGKSTL LDALAGRLAS NTRQSGEILV NGSKQRLAFG TSAYVTQDDT
201: LMTTLTVREA VYYSAQLQLP DSMSRSEKKE RAEMTIREMG LQDAMNTRIG GWSVKGLSGG QKRRVSICIE ILTRPRLLFL DEPTSGLDSA ASYHVMSRIV
301: KLARHDGITV IASIHQPSSE VFEVFHNLCL LSSGKTVYFG SASMAKEFFD SNGFPCPALR NPSDHYLRTI NKDFDSDTEQ GHGGTTNTEE AINTLIKSYK
401: SSEICQQVQC RVYEICQLKG GLLEKKGSQA SFITQCLVLT RRSSVNMYRD LGYYWLRLAI YIALCLCVGT IFYDIGFSYG SIQARGSMLM FVAAFLTFMA
501: IGGFPSFVED MKIFGRERLN GHYGVGAFVV GNTFSSIPYL LMISLIPGVI AYYLVGLHKG FEHFVYFALM LFVCMMLVES LMMIVASIVP DFLMGIITGA
601: GIQGVMMLNG GFFRLPNDLP KPFWRYPMYY IAFHKYANQG FYKNEFQGLT FPNNQAGGPP TITGEEILQN VWQVETGYSK WVDVAILFGM VVLYRLLFLG
701: IIKTVEKVKP MIKGLMVASP EKSKQIIENP PSSPYLHEAK M

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.