Factsheet for VIT_03s0017g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	84.32	80.33
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	78.88	75.37
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	69.25	70.91
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	26.4	69.96
PGSC0003DMT400032670	Potato	cytosol, peroxisome, plasma membrane	65.22	66.77
Solyc01g105450.2.1	Tomato	plasma membrane	64.91	66.67
VIT_03s0017g01320.t01	Wine grape	plasma membrane	63.66	63.57
Solyc01g105400.2.1	Tomato	cytosol, plastid	11.34	62.39
VIT_00s0625g00020.t01	Wine grape	plastid	70.5	61.27
VIT_06s0009g00530.t01	Wine grape	mitochondrion	17.08	59.14
VIT_00s0625g00050.t01	Wine grape	cytosol	55.43	55.52
VIT_00s0989g00010.t01	Wine grape	plastid	69.1	49.94
VIT_06s0061g00230.t01	Wine grape	plasma membrane	45.03	46.62
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	50.31	45.96
VIT_06s0061g00260.t01	Wine grape	cytosol	47.2	44.57
VIT_06s0061g00250.t01	Wine grape	cytosol	23.91	43.5
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.5	40.3
VIT_06s0061g00350.t01	Wine grape	plastid	38.04	33.93
VIT_06s0004g02490.t01	Wine grape	plasma membrane	23.6	13.83
VIT_08s0040g01620.t01	Wine grape	cytosol	23.76	13.75
VIT_13s0019g04600.t01	Wine grape	plasma membrane	23.6	13.57

Protein Annotations

EntrezGene:100254677	wikigene:100254677	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB58011	ProteinID:CCB58011.1	UniProt:F6HTK1	EMBL:FN596248
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
EntrezGene:LOC100254677	wikigene:LOC100254677	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF301	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC71053
TMHMM:TMhelix	UniParc:UPI0002108E8A	ArrayExpress:VIT_03s0017g01290	EnsemblPlantsGene:VIT_03s0017g01290	EnsemblPlants:VIT_03s0017g01290.t01	RefSeq:XP_002270573
RefSeq:XP_002270573.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:17178182..17181964

Molecular Weight (calculated)

71098.7 Da

IEP (calculated)

9.279

GRAVY (calculated)

0.057

Length

644 amino acids

Sequence
(BLAST)

001: METVPRPRPR EVLGGVDKEG GIFLTWEDLS VTASNGKGGS RLLLQGLTGF ARPGEVLAIM GPSGCGKSTL LDALAGRLGS NISQSGMVLV NGHQQTLAYG
101: TSAYVTQDDT LITTLTVGEA VCYSALLQLP DSMSKSEKKE RADMTIREMG LQDAVNTRIG GWGVKGISGG QKRRVSICIE ILTHPKLLFL DEPTSGLDSA
201: ASYYVMSRIT GLDRQHGRTI ITSIHQPSCE VFALFDNLCL LSSGRTVYFG PAHAADEFFS SNGFPCPTHQ NPSDHFLKTI NKDFEQDIEQ GFGGKKSKEE
301: AIDILTKAYK SSGNFQQVQS QVAKIHKKEG GALKKRSHAS FLNQCLVLTR RSFVNMYRDL GYYWLRLAVY IALTIALGTI FYNVGHSNSS IKDRGAMLMY
401: VASFLTFMTI GGFPSFVEDM KVFGRERLNG HYGSSAFVVG NTLSSIPYLL VISLIPGAIA YYLTGLQKGC EHSIYYALVL FTCMILVEGL MMIVASIVPN
501: FLMGIITGAG IQGLLMLSGG FFRLPDDFPK PFWRYPLYYL SFNKYAYQGL YKNEFQGLKF PNDEAGGPPI ISGEEILRKR WQVEMVYSKW IDLAILLGMA
601: VLYRLLFLIT IKTTEKVIPL VKALVSRPSK RSKQVRKFGE CITI

Best Arabidopsis Sequence Match ( AT2G28070.2 )
(BLAST)

001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR

Arabidopsis Description

ABCG3ABC transporter G family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.