Factsheet for VIT_16s0039g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38814	Soybean	cytosol, peroxisome, plasma membrane	87.8	87.55
KRH09311	Soybean	cytosol, peroxisome, plasma membrane	87.66	87.54
Solyc03g019760.2.1	Tomato	nucleus	86.67	86.06
PGSC0003DMT400039496	Potato	cytosol, peroxisome, plasma membrane	86.1	85.86
GSMUA_Achr5P10800_001	Banana	cytosol, peroxisome, plasma membrane	83.97	85.43
AT1G17840.1	Thale cress	cytosol, peroxisome, plasma membrane	84.68	84.92
CDY26211	Canola	cytosol, peroxisome, plasma membrane	80.71	84.17
CDY19179	Canola	cytosol, peroxisome, plasma membrane	80.57	84.02
Bra016584.1-P	Field mustard	cytosol, peroxisome, plasma membrane	83.4	83.88
Bra025944.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.43	83.88
CDX96749	Canola	cytosol, peroxisome, plasma membrane	80.14	83.46
GSMUA_Achr5P19820_001	Banana	cytosol, peroxisome, plasma membrane	78.87	83.36
CDX83888	Canola	cytosol, peroxisome, plasma membrane	79.72	82.77
TraesCS1B01G181300.2	Wheat	cytosol, peroxisome, plasma membrane	79.57	78.35
Os10t0494300-01	Rice	extracellular, plasma membrane	80.28	78.28
TraesCS1D01G161500.2	Wheat	cytosol, peroxisome, plasma membrane	79.43	78.21
KXG38261	Sorghum	cytosol, peroxisome, plasma membrane	78.72	77.73
Os04t0528300-01	Rice	plasma membrane	77.73	77.07
Zm00001d013960_P001	Maize	cytosol, peroxisome, plasma membrane	77.16	76.62
Zm00001d002871_P001	Maize	cytosol, peroxisome, plasma membrane	78.3	76.56
TraesCSU01G020100.1	Wheat	plasma membrane	76.88	75.7
TraesCS2A01G374100.1	Wheat	plasma membrane	77.02	75.63
TraesCS1A01G164500.1	Wheat	cytosol	70.78	72.74
Zm00001d032601_P002	Maize	cytosol, peroxisome, plasma membrane	75.6	72.42
HORVU2Hr1G090960.2	Barley	cytosol	76.03	70.9
OQU82009	Sorghum	mitochondrion	78.44	70.9
TraesCS2D01G370400.2	Wheat	plastid	76.45	69.46
TraesCS1D01G150800.1	Wheat	cytosol, peroxisome, plasma membrane	68.37	66.94
VIT_06s0061g00230.t01	Wine grape	plasma membrane	50.92	57.72
VIT_06s0061g00250.t01	Wine grape	cytosol	28.51	56.78
VIT_06s0061g00260.t01	Wine grape	cytosol	53.62	55.43
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	49.08	55.01
VIT_03s0017g01320.t01	Wine grape	plasma membrane	46.95	51.32
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	17.59	51.03
VIT_03s0017g01290.t01	Wine grape	cytosol	45.96	50.31
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	47.09	49.11
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	46.1	48.22
VIT_00s0625g00020.t01	Wine grape	plastid	50.35	47.91
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.65	47.18
VIT_06s0009g00530.t01	Wine grape	mitochondrion	11.77	44.62
VIT_00s0625g00050.t01	Wine grape	cytosol	40.43	44.32
VIT_00s0989g00010.t01	Wine grape	plastid	49.65	39.28
VIT_06s0061g00350.t01	Wine grape	plastid	34.89	34.07
VIT_06s0004g02490.t01	Wine grape	plasma membrane	25.11	16.11
VIT_13s0019g04600.t01	Wine grape	plasma membrane	24.26	15.27
VIT_08s0040g01620.t01	Wine grape	cytosol	23.97	15.18

Protein Annotations

EntrezGene:100263167	wikigene:100263167	MapMan:21.9.4.1	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC_2_trans	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM432206	ProteinID:CAN69297	ProteinID:CAN69297.1
ProteinID:CBI26391	ProteinID:CBI26391.3	UniProt:D7T7C0	EMBL:FN595750	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009611	GO:GO:0009628	GO:GO:0009651	GO:GO:0009653	GO:GO:0009719
GO:GO:0009737	GO:GO:0009790	GO:GO:0009791	GO:GO:0009897	GO:GO:0010222	GO:GO:0010588
GO:GO:0015245	GO:GO:0015908	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0042803	GO:GO:0055085	GO:GO:0080051	InterPro:IPR003439	EntrezGene:LOC100263167
wikigene:LOC100263167	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF271	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC53523	TIGR:TC66965
TMHMM:TMhelix	UniParc:UPI0001984E53	ArrayExpress:VIT_16s0039g00010	EnsemblPlantsGene:VIT_16s0039g00010	EnsemblPlants:VIT_16s0039g00010.t01	unigene:Vvi.14593
RefSeq:XP_002262619	RefSeq:XP_002262619.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:7763..12080

Molecular Weight (calculated)

78640.6 Da

IEP (calculated)

9.162

GRAVY (calculated)

0.115

Length

705 amino acids

Sequence
(BLAST)

001: MRNSANNAMM EIEASKPPAM GYVVGGLSPL SETLWKERTD TEFVGDVSAR LTWKDLTVMV TLSNGETQKV LEGLTGYAEP GTFTALMGPS GSGKSTLLDA
101: LSSRLAANAF LSGSILLNGR KTKLSFGTAA YVTQDDNLIG TLTVRETISY SARLRLPDKM RWSEKRALVE STIIEMGLQD CADTVIGNWH LRGISGGEKR
201: RVSIALEILM RPRLLFLDEP TSGLDSASAF FVTQTLRGLS RDGRTVIASI HQPSSEVFEL FDRLYLLSGG KTVYFGQASE AYEFFAQAGF PCPTLRNPSD
301: HFLRCINSDF DKVKATLKGS MKLRFEISDD PLEKVTTAEA IRTLIDFYRT SQYSYAAKEK VEEISKVKGT VLDSGGSQAS FLMQAFTLTK RSFINMSRDF
401: GYYWLRLVIY IVVTICIGTI YLDVGTSYNS ILARGSCASF VFGFVTFMSI GGFPSFVEDM KVFQRERLNG HYGVTAFVIS NTISAMPFLI LITFISGTVC
501: YFMVHLHPGF LHYLFFVLCL YASVTVVESL MMAIASVIPN FLMGIIIGAG IQGIFMLVSG YFRLPNDIPK PVWRYPMSYI SFHFWALQGQ YQNDLKGLMF
601: DNQTPNGLPK IPGDYILENV FQINVKRSKW IDLSVIFSMI VVYRIIFFIM IKINEDVTPW VRGYIARRRM QQKNGNQTTT IAPDGLTQSP SLRSYVATTG
701: TGSKR

Best Arabidopsis Sequence Match ( AT1G17840.1 )
(BLAST)

001: MEIEASRQQT TVPVSVGGGN FPVGGLSPLS EAIWREKAPT EFVGDVSARL TWQDLTVMVT MGDGETQNVL EGLTGYAEPG SLTALMGPSG SGKSTMLDAL
101: ASRLAANAFL SGTVLLNGRK TKLSFGTAAY VTQDDNLIGT LTVRETIWYS ARVRLPDKML RSEKRALVER TIIEMGLQDC ADTVIGNWHL RGISGGEKRR
201: VSIALEILMR PRLLFLDEPT SGLDSASAFF VTQTLRALSR DGRTVIASIH QPSSEVFELF DRLYLLSGGK TVYFGQASDA YEFFAQAGFP CPALRNPSDH
301: FLRCINSDFD KVRATLKGSM KLRFEASDDP LEKITTAEAI RLLVDYYHTS DYYYTAKAKV EEISQFKGTI LDSGGSQASF LLQTYTLTKR SFINMSRDFG
401: YYWLRLLIYI LVTVCIGTIY LNVGTSYSAI LARGSCASFV FGFVTFMSIG GFPSFVEDMK VFQRERLNGH YGVAAFVIAN TLSATPFLIM ITFISGTICY
501: FMVGLHPGFT HYLFFVLCLY ASVTVVESLM MAIASIVPNF LMGIIIGAGI QGIFMLVSGF FRLPNDIPKP FWRYPMSYIS FHFWALQGQY QNDLRGLTFD
601: SQGSAFKIPG EYVLENVFQI DLHRSKWINL SVILSMIIIY RIIFFIMIKT NEDVTPWVRG YIARRRMKQK NGTQNTTVAP DGLTQSPSLR NYIATRTDGA
701: RRW

Arabidopsis Description

ABCG11ABC transporter G family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.