Factsheet for VIT_06s0061g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89865	Soybean	plastid	58.86	86.73
KRH22852	Soybean	cytosol, plastid	86.15	85.91
Solyc11g069710.1.1	Tomato	plastid	85.6	85.48
PGSC0003DMT400050589	Potato	plastid	85.6	85.48
KRH26514	Soybean	plasma membrane, plastid	85.6	85.36
Solyc06g074970.1.1	Tomato	plastid	69.67	83.55
CDY30512	Canola	cytosol	46.81	81.84
PGSC0003DMT400031312	Potato	plastid	81.3	81.19
AT2G28070.1	Thale cress	plastid	80.75	79.86
Bra011981.1-P	Field mustard	plastid	79.36	78.28
CDX77150	Canola	plastid	78.81	77.95
Bra034385.1-P	Field mustard	plastid	73.68	77.21
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	77.42	76.58
CDX71393	Canola	plastid	79.5	71.93
CDY04533	Canola	mitochondrion	79.78	70.59
EER90467	Sorghum	cytosol, plasma membrane, plastid	68.42	68.42
HORVU5Hr1G125010.1	Barley	cytosol, peroxisome, plasma membrane, plastid	67.87	67.77
TraesCS5D01G551400.1	Wheat	cytosol, peroxisome, plasma membrane	67.45	67.27
TraesCS4A01G315900.1	Wheat	cytosol, peroxisome, plasma membrane	67.31	66.85
Os03t0859500-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	66.07	66.34
Zm00001d034918_P003	Maize	cytosol, nucleus, plasma membrane, plastid	68.14	45.64
VIT_07s0191g00010.t01	Wine grape	peroxisome, plasma membrane, vacuole	33.52	38.47
VIT_03s0017g01320.t01	Wine grape	plasma membrane	34.07	38.14
VIT_03s0017g01290.t01	Wine grape	cytosol	33.93	38.04
VIT_06s0061g00250.t01	Wine grape	cytosol	18.42	37.57
VIT_03s0017g01280.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	33.66	35.95
VIT_06s0061g00230.t01	Wine grape	plasma membrane	30.89	35.85
VIT_03s0017g01300.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	33.24	35.61
VIT_06s0009g00530.t01	Wine grape	mitochondrion	9.0	34.95
VIT_16s0039g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	34.07	34.89
VIT_00s0625g00020.t01	Wine grape	plastid	35.6	34.68
VIT_06s0061g00260.t01	Wine grape	cytosol	31.58	33.43
VIT_00s0822g00010.t01	Wine grape	cytosol, peroxisome, plasma membrane	11.08	32.92
VIT_00s0625g00050.t01	Wine grape	cytosol	28.12	31.57
VIT_06s0061g00240.t01	Wine grape	cytosol, peroxisome, plasma membrane	30.47	30.26
VIT_00s0989g00010.t01	Wine grape	plastid	35.18	28.51
VIT_08s0040g01620.t01	Wine grape	cytosol	22.3	14.47
VIT_06s0004g02490.t01	Wine grape	plasma membrane	21.47	14.1
VIT_13s0019g04600.t01	Wine grape	plasma membrane	21.05	13.57

Protein Annotations

EntrezGene:100241317	wikigene:100241317	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	ProteinID:CBI17169	ProteinID:CBI17169.3	UniProt:D7SNE0	EMBL:FN594957	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	EntrezGene:LOC100241317
wikigene:LOC100241317	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF447	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000198383C	ArrayExpress:VIT_06s0061g00350
EnsemblPlantsGene:VIT_06s0061g00350	EnsemblPlants:VIT_06s0061g00350.t01	RefSeq:XP_002273792	RefSeq:XP_002273792.1	RefSeq:XP_010651805.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:17746022..17756053

Molecular Weight (calculated)

80162.5 Da

IEP (calculated)

8.939

GRAVY (calculated)

0.227

Length

722 amino acids

Sequence
(BLAST)

001: MEEIQSQSDN YRSSSSSASS PASRVPSSNF FYLRKPGSLR QPISFEDSPE WEDTDIDVRV EEGGDSIHIA TPASPSLSKL NSGSLPSPPL PESAIFARKI
101: AGASIVWKDL TVTIKGKRKY SDKVVKSSNG YTLPGTMTVI MGPAKSGKST LLRALAGRLH NSAKMYGEVF VNGTKRHLPY GSYGFVERET TLIGSLTVRE
201: FLYYSALLQL PGFFCQKKSV VEDSIHAMSL GDYANKLIGG HCYMKGLPSG ERRRVSIARE LVMRPHILFI DEPLYHLDSV SALLMMVTLK KLASTGCTLI
301: FTIYQSSTEV FGLFDRICLL SNGNTLFFGE TLACLQHFSN AGFPCPIMQS PSDHFLRAIN TDFDRIIAMC KNWQDDHGDF SSVNMDTAVA IRTLEATYKS
401: SVDAAAVESM IIKLTDKEGP LLKSKGKASS ATRIAVLTWR SLLIMSREWK YFWLRLVLCM LFTLCVGTVF SGLGHSLSSV VTRVAAIFVF VSFTSLLSIA
501: GVPAHLKEIK IYACEESNQH SGALVFLLGQ LLASIPFLFL ISVSSSLIFY FLIGLRDEFS LLMYFVLNFF TCLLVNEGLT LVVASIWQDA FWSILTLVCI
601: HVLMMLSAGY FRLRSALPGP VWTYPLSYIA FHTYAIQGLL ENEYIGTSFA VGQVRSISGY QALRSAYDIS PNSNSKWGNL LVLFLMAVGY RILVFVLLRF
701: RVRKNVSACR FFQCNQNTND AR

Best Arabidopsis Sequence Match ( AT2G28070.2 )
(BLAST)

001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR

Arabidopsis Description

ABCG3ABC transporter G family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.