CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011981.1-P	Field mustard	plastid	90.1	98.22
AT2G28070.1	Thale cress	plastid	85.84	93.84
CDY04533	Canola	mitochondrion	93.86	91.79
CDX77150	Canola	plastid	83.46	91.23
CDY30512	Canola	cytosol	45.36	87.65
KRG89865	Soybean	plastid	50.13	81.63
VIT_06s0061g00350.t01	Wine grape	plastid	71.93	79.5
Solyc06g074970.1.1	Tomato	plastid	59.65	79.07
KRH26514	Soybean	plasma membrane, plastid	71.3	78.59
KRH22852	Soybean	cytosol, plastid	71.3	78.59
Solyc11g069710.1.1	Tomato	plastid	70.43	77.73
PGSC0003DMT400050589	Potato	plastid	70.43	77.73
PGSC0003DMT400031312	Potato	plastid	68.05	75.1
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plasma membrane	63.03	68.9
EER90467	Sorghum	cytosol, plasma membrane, plastid	58.4	64.54
TraesCS5D01G551400.1	Wheat	cytosol, peroxisome, plasma membrane	57.77	63.67
HORVU5Hr1G125010.1	Barley	cytosol, peroxisome, plasma membrane, plastid	57.64	63.62
TraesCS4A01G315900.1	Wheat	cytosol, peroxisome, plasma membrane	57.14	62.72
Os03t0859500-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	55.64	61.75
Zm00001d034918_P003	Maize	cytosol, nucleus, plasma membrane, plastid	57.77	42.76
CDY26211	Canola	cytosol, peroxisome, plasma membrane	28.32	33.43
CDX96749	Canola	cytosol, peroxisome, plasma membrane	28.32	33.38
CDY19179	Canola	cytosol, peroxisome, plasma membrane	28.2	33.28
CDX83888	Canola	cytosol, peroxisome, plasma membrane	28.2	33.14
CDY06406	Canola	peroxisome	27.44	32.25
CDY43913	Canola	nucleus, peroxisome, plasma membrane	27.94	32.23
CDY22844	Canola	plastid	25.44	32.22
CDX87823	Canola	nucleus, peroxisome, plasma membrane	27.19	32.05
CDY49810	Canola	plasma membrane	24.94	31.59
CDY61513	Canola	golgi, mitochondrion, peroxisome, plasma membrane	24.69	31.27
CDY18337	Canola	plasma membrane	7.27	23.48
CDX71030	Canola	plasma membrane	18.67	15.6
CDY25855	Canola	plasma membrane	19.3	14.85
CDY51880	Canola	plasma membrane	19.05	14.42
CDY62076	Canola	plasma membrane	19.17	14.09
CDY62072	Canola	endoplasmic reticulum, golgi, plasma membrane	18.8	14.08
CDY24098	Canola	plasma membrane	18.67	13.99
CDY11955	Canola	plasma membrane	19.05	13.97
CDY36779	Canola	plasma membrane	18.67	13.94
CDY24100	Canola	plasma membrane	18.92	13.9
CDX91328	Canola	plasma membrane	18.42	13.6
CDX74994	Canola	plasma membrane	18.42	13.6
CDY70653	Canola	extracellular, golgi, vacuole	3.13	7.06

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	GO:A0A078C8N3	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
EnsemblPlants:CDX71393	ProteinID:CDX71393	ProteinID:CDX71393.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887
EnsemblPlantsGene:GSBRNA2T00148207001	InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF200	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0004EDF1AA
SEG:seg	:	:	:	:	:

Description

BnaC04g16280D

Coordinates

chrLK031793:-:403618..407532

Molecular Weight (calculated)

88720.9 Da

IEP (calculated)

9.324

GRAVY (calculated)

0.142

Length

798 amino acids

Sequence
(BLAST)

001: MLIPNSKFSF SPSIVFSIFA EPRELRAHTL LLSLPKKRFS ASLSLSLSGG STWFRSRCQG KFETFLEGSK MEEIQSQSDL YRSSSSCASS PTSRVPSSHF
101: FYVRKPGSLR QPISFEDSPE WDDPDARMEY EAGGVGGDSI NDAAATPISP SLSKINSGSM ASPHVPEGAG GSAVRKIAGA SIAWRDLTVT MTGKRKYSDK
201: VVKSSNGYAF PGTMTVIMGP AKSGKSTLLR ALAGRLPPSA KMYGEVFVNG SKSHMPYGSY GYVERETELI GSLTVREFLY YSALLQLPGF LFQKRGVVED
301: AIQAMSLSDY ANKLIGGHCY MKGLRSGERR RVSIARELVM RPHILFIDEP LYHLDSVSAL LMMVTLKKLA SMGCTLVFTI YQSSTEVFGL FDRICLLSNG
401: NTLFFGETLA CLQHFSNAGF PCPIMQSPSD HFLRAINTDF DRIIAMCKKW QDDNGDFSAV NMDTAVAIRT LEATYKSSED AASVETMIFK LTEREGTQLK
501: SKGKAGAATR VAVLTWRSLL VMSREWKYYW LRLILYMILT LCIGTLYSGL GHSLSSVATR VSAVFVFVSF ASLLGIAGIP SLLKEIKIYG SEASNQHSGA
601: FVFLLGQFLG SIPFLFLMSI SSSLVFYFMV GLRDDFSLLM YFVLNFFMCL LVNEGLMLFI ACLWRDVYWT TLTLISLHVI MMLSAGHFRI RNALPKPVWT
701: YPLAYISFHT YSIEGLLENE YLGEVFAVGE VRSISGYEAI RGDYQISPDT SSKWRNMLVL LAMAFGYRLI VYVLLRFGLN KNVSARLLLC HRKNNSSR

Best Arabidopsis Sequence Match ( AT2G28070.2 )
(BLAST)

001: MEEIQSQSDL YRSSSSSASS PTSRVPSSHF FYVRKPGSLR QPISFEDSPE WEDTPDVDLR MEDEAGGGDS INDATTTPVS PSLSKMNSGS MASPPVPEGG
101: AGTGVVRKIA GASIAWKDLT VTMKGKRKYS DKVVKSSNGY AFPGTMTVIM GPAKSGKSTL LRALAGRLPP SAKMYGEVFV NGSKSHMPYG SYGFVERETQ
201: LIGSLTVREF LYYSALLQLP GFLFQKRSVV EDAIQAMSLS DYANKLIGGH CYMKGLRSGE RRRVSIAREL VMRPHILFID EPLYHLDSVS ALLMMVTLKK
301: LASMGCTLVF TIYQSSTEVF GLFDRICLLS NGNTLFFGET LACLQHFSNA GFPCPIMQSP SDHFLRAINT DFDRIIAMCK NWQDDNGDFS AVNMDTAVAI
401: RTLEATYKSS ADADSVEAMI IKLTEREGTQ LKSKGKAGAA TRVAVLTWRS LLVMSREWKY YWLRLILYMI LTLSIGTLYS GLGHSLSSVA TRVAAVFVFV
501: SFASLLGIAG IPSLLKEIKI YRSEASNQHS GAFVFLLGQF LGSIPFLFLM SISSSLVFYF MVGLRDDFSL LMYFVLNFFM CLLVNEGLML FIACIWRDVY
601: WSTLTLISVH VIMMLAAGHF RIRTALPKPV WTYPFAYISF HTYSIEGLLE NEYLGEVFAV GEVRSISGYQ AIQGNYQISP DTNAKWRNML VLLAMAFGYR
701: LLVYVLLRFG LNKNVSGRLL LSHKKNNSSR

Arabidopsis Description

ABCG3ABC transporter G family member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.