Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G21090.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT3G21090.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61513 | Canola | golgi, mitochondrion, peroxisome, plasma membrane | 100.0 | 39.21 |
| CDY06406 | Canola | peroxisome | 100.0 | 36.38 |
| Bra031249.1-P | Field mustard | peroxisome | 100.0 | 35.75 |
| AT3G21090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 94.74 | 33.86 |
| CDX87823 | Canola | nucleus, peroxisome, plasma membrane | 83.0 | 30.28 |
| CDY43913 | Canola | nucleus, peroxisome, plasma membrane | 83.0 | 29.62 |
| VIT_06s0061g00230.t01 | Wine grape | plasma membrane | 61.94 | 24.6 |
| KRH24076 | Soybean | cytosol, peroxisome, plasma membrane | 66.4 | 23.6 |
| KRH29048 | Soybean | cytosol, peroxisome, plasma membrane | 65.99 | 23.32 |
| PGSC0003DMT400077106 | Potato | cytosol, peroxisome, plasma membrane | 60.73 | 21.99 |
| Solyc11g065350.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 59.51 | 21.55 |
| GSMUA_Achr4P00390_001 | Banana | plasma membrane | 51.82 | 20.68 |
| Zm00001d010426_P001 | Maize | plastid | 56.68 | 20.29 |
| EES19248 | Sorghum | cytosol, peroxisome, plasma membrane | 56.28 | 20.2 |
| Os05t0222200-01 | Rice | nucleus, peroxisome, plasma membrane | 57.09 | 20.14 |
| TraesCS1A01G126900.1 | Wheat | nucleus, peroxisome, plasma membrane | 55.47 | 19.88 |
| TraesCS1B01G147700.1 | Wheat | nucleus, peroxisome, plasma membrane | 55.47 | 19.88 |
| TraesCS1D01G126600.1 | Wheat | nucleus, peroxisome, plasma membrane | 55.47 | 19.88 |
| HORVU1Hr1G030200.1 | Barley | nucleus, peroxisome, plasma membrane | 55.06 | 19.74 |
| CDY22844 | Canola | plastid | 47.37 | 18.57 |
| CDY49810 | Canola | plasma membrane | 46.96 | 18.41 |
| GSMUA_Achr4P00380_001 | Banana | plastid | 48.99 | 14.6 |
| CDY19179 | Canola | cytosol, peroxisome, plasma membrane | 39.27 | 14.35 |
| CDY26211 | Canola | cytosol, peroxisome, plasma membrane | 38.87 | 14.2 |
| CDX96749 | Canola | cytosol, peroxisome, plasma membrane | 38.87 | 14.18 |
| CDX83888 | Canola | cytosol, peroxisome, plasma membrane | 38.87 | 14.14 |
| CDX77150 | Canola | plastid | 22.67 | 7.67 |
| CDX71393 | Canola | plastid | 23.48 | 7.27 |
| CDY04533 | Canola | mitochondrion | 22.67 | 6.86 |
| CDY25855 | Canola | plasma membrane | 11.34 | 2.7 |
| CDY62072 | Canola | endoplasmic reticulum, golgi, plasma membrane | 11.34 | 2.63 |
| CDY24098 | Canola | plasma membrane | 10.93 | 2.54 |
| CDY51880 | Canola | plasma membrane | 10.53 | 2.47 |
| CDY24100 | Canola | plasma membrane | 10.53 | 2.39 |
| CDY62076 | Canola | plasma membrane | 10.12 | 2.3 |
| CDX74994 | Canola | plasma membrane | 9.31 | 2.13 |
| CDX91328 | Canola | plasma membrane | 9.31 | 2.13 |
| CDY11955 | Canola | plasma membrane | 9.31 | 2.11 |
| CDX71030 | Canola | plasma membrane | 7.69 | 1.99 |
| CDY36779 | Canola | plasma membrane | 8.1 | 1.87 |
| CDY30512 | Canola | cytosol | 1.21 | 0.73 |
| CDY70653 | Canola | extracellular, golgi, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY18337 | EnsemblPlantsGene:GSBRNA2T00002925001 | GO:A0A078G022 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:ABC_2_trans | PANTHER:PTHR19241 | PANTHER:PTHR19241:SF338 | PFAM:PF01061 | ProteinID:CDY18337 | ProteinID:CDY18337.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE56E0 | UniProt:A0A078G022 | MapMan:35.1 | : |
Description
BnaC09g30870DBnaC09g30870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G022]
Coordinates
chrLK032084:+:582581..583526
Molecular Weight (calculated)
27953.6 Da
IEP (calculated)
10.360
GRAVY (calculated)
0.331
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGYYGVSVY ILSNYISSFP FLVSLSVITG TITYNLVKFR PGFSHYAFFC LNIFFSVSVI ESLMMVVASL VPNFLMGLVT GAGLIGIIMM TSGFFRLLPD
101: LPKIFWRYPV SYISYGSWAI QGGYKNDFLG LEFEPLFPGE PKMTGEEVIN KIFRVKVTHS KWWDLAAVVG ILVCYRLLFF VVLKLKERAG PALKAIQAKR
201: TMRNLDRRPS FKRMPSLSLS LSSMSSRRHQ PFRSLSSQEG LNSPAHY
101: LPKIFWRYPV SYISYGSWAI QGGYKNDFLG LEFEPLFPGE PKMTGEEVIN KIFRVKVTHS KWWDLAAVVG ILVCYRLLFF VVLKLKERAG PALKAIQAKR
201: TMRNLDRRPS FKRMPSLSLS LSSMSSRRHQ PFRSLSSQEG LNSPAHY
001: MATHDFDFTD PYGNKDRKSL YSNQDNYFNN WSSLTQSEEV VEELSIQQTK YDHRSLPSLR TAEAEAAEWN ELERWGNQEL QHNGTRIRGI ITYKSGNLPG
101: VLSFSVIEIL MMVVASFVPN FLTGLFTGAG LIGIIMTSSG FSRLLPDLPK IFCRFSISYT ISYMIFGSWA IKLGHNNNFL GPLSPDEPKM TGEEMNMNEF
201: GVKVTHSGWW GFPEIVIAIL VCTWLLFFVA QKLKERARPA SRVIQAKVYF NVQLS
101: VLSFSVIEIL MMVVASFVPN FLTGLFTGAG LIGIIMTSSG FSRLLPDLPK IFCRFSISYT ISYMIFGSWA IKLGHNNNFL GPLSPDEPKM TGEEMNMNEF
201: GVKVTHSGWW GFPEIVIAIL VCTWLLFFVA QKLKERARPA SRVIQAKVYF NVQLS
Arabidopsis Description
ABC transporter-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LJC4]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.