CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG91803
KRG94975
KRH18664
KRH22384
KRH26949
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51500.1	KRG89812	AT3G56800.1	15299147
AT1G51500.1	KRG94975	AT3G56800.1	15299147
AT1G51500.1	KRH18664	AT3G56800.1	15299147
AT1G51500.1	KRH22384	AT4G03560.1	15299147
AT1G51500.1	KRH26949	AT4G03560.1	15299147
AT3G21090.1	KRG91803	AT4G09570.1	19130088
AT3G21090.1	KRH34983	AT4G09570.1	19130088
AT3G21090.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29048	Soybean	cytosol, peroxisome, plasma membrane	98.13	97.57
VIT_06s0061g00230.t01	Wine grape	plasma membrane	71.08	79.42
AT3G21090.1	Thale cress	cytosol, peroxisome, plasma membrane	73.24	73.66
AT1G51500.1	Thale cress	cytosol, peroxisome, plasma membrane	72.81	73.65
Bra030437.1-P	Field mustard	nucleus, peroxisome, plasma membrane	73.09	73.41
CDY43913	Canola	nucleus, peroxisome, plasma membrane	73.09	73.41
CDX87823	Canola	nucleus, peroxisome, plasma membrane	71.22	73.12
Bra031249.1-P	Field mustard	peroxisome	72.37	72.79
CDY06406	Canola	peroxisome	70.65	72.31
CDY61513	Canola	golgi, mitochondrion, peroxisome, plasma membrane	65.47	72.22
PGSC0003DMT400077106	Potato	cytosol, peroxisome, plasma membrane	69.64	70.97
Solyc11g065350.1.1	Tomato	cytosol, peroxisome, plasma membrane	69.35	70.67
KRH24072	Soybean	cytosol, peroxisome, plasma membrane	67.91	68.6
KRH29043	Soybean	cytosol, peroxisome, plasma membrane	67.77	68.06
GSMUA_Achr4P00390_001	Banana	plasma membrane	59.57	66.88
CDY18337	Canola	plasma membrane	23.6	66.4
Zm00001d010426_P001	Maize	plastid	63.6	64.06
EES19248	Sorghum	cytosol, peroxisome, plasma membrane	63.02	63.66
Os05t0222200-01	Rice	nucleus, peroxisome, plasma membrane	63.31	62.86
TraesCS1D01G126600.1	Wheat	nucleus, peroxisome, plasma membrane	61.87	62.41
TraesCS1B01G147700.1	Wheat	nucleus, peroxisome, plasma membrane	61.87	62.41
TraesCS1A01G126900.1	Wheat	nucleus, peroxisome, plasma membrane	61.87	62.41
HORVU1Hr1G030200.1	Barley	nucleus, peroxisome, plasma membrane	61.87	62.41
KRH66902	Soybean	cytosol	25.18	59.52
KRH66901	Soybean	plasma membrane	34.24	54.84
KRH66900	Soybean	plasma membrane	51.8	54.46
KRH09311	Soybean	cytosol, peroxisome, plasma membrane	54.1	53.26
KRH38814	Soybean	cytosol, peroxisome, plasma membrane	54.1	53.18
KRH62969	Soybean	plasma membrane	7.77	51.92
KRH66903	Soybean	extracellular	9.21	50.39
GSMUA_Achr4P00380_001	Banana	plastid	58.13	48.73
KRH42130	Soybean	plasma membrane	42.73	46.33
KRH18184	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	28.63	45.23
KRH42131	Soybean	cytosol, nucleus, plasma membrane	45.47	45.21
KRH18182	Soybean	cytosol	43.74	44.97
KRH18189	Soybean	cytosol, peroxisome, plasma membrane	44.32	44.7
KRH42129	Soybean	cytosol, peroxisome, plasma membrane	43.45	44.54
KRH18202	Soybean	cytosol, nucleus, plasma membrane, plastid	44.17	44.3
KRH42133	Soybean	extracellular	43.45	43.45
KRH42128	Soybean	plasma membrane	38.13	42.54
KRH18205	Soybean	cytosol, peroxisome, plasma membrane	40.29	42.49
KRH42124	Soybean	cytosol	39.42	40.53
KRH18181	Soybean	cytosol, peroxisome, plasma membrane	38.99	39.5
KRH18188	Soybean	cytosol	34.68	37.95
KRG95235	Soybean	plasma membrane	52.37	32.47
KRH26514	Soybean	plasma membrane, plastid	33.81	32.46
KRH22852	Soybean	cytosol, plastid	33.53	32.18
KRG89865	Soybean	plastid	22.16	31.43
KRH25067	Soybean	plasma membrane	23.74	15.12
KRH30616	Soybean	plasma membrane	23.74	15.03
KRH32536	Soybean	plasma membrane	23.31	14.74
KRG91932	Soybean	plasma membrane	23.45	14.62
KRH34842	Soybean	plasma membrane	23.45	14.61
KRH19928	Soybean	plasma membrane	23.02	14.56
KRH71703	Soybean	plasma membrane	21.87	13.66

Protein Annotations

EntrezGene:100777598	MapMan:21.9.4.2	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02007169	EnsemblPlantsGene:GLYMA_12G020400	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1LPB4	InterPro:IPR003439	ProteinID:KRH24075.1
EnsemblPlants:KRH24076	ProteinID:KRH24076	ProteinID:KRH24076.1	ProteinID:KRH24077.1	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF01061	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF338	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000233D8AA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:1445666..1452363

Molecular Weight (calculated)

77449.0 Da

IEP (calculated)

8.976

GRAVY (calculated)

0.091

Length

695 amino acids

Sequence
(BLAST)

001: MEIESSAATD SNNWGGAAAV EREMTYTGFD RGTFLAWQDL RVVIPNFGKG PTKRLLNGLN GYAEPGRIMA IMGPSGSGKS TLLDSLAGRL SKNVVMTGNV
101: LLNGKKKGLG AGYGVVAYVT QEDVLLGTLT VKETISYSAH LRLPTSMSKE EVNSIIDGTI IEMGLQDCAD RLIGNWHFRG ISGGEKKRLS IALEILTRPR
201: LLFLDEPTSG LDSASAFFVV QTLRNVARDG RTVISSIHQP SSEVFALFDD LFLLSGGETV YFGEAKSAIE FFAEAGFPCP RKRNPSDHFL RCINSDFDIV
301: TATLKGSQRI HDVPNSADPF MNLATAEIKA TLVEKYRRST YARRAKNRIQ ELSTDEGLEP PTQHGSQASW WKQLSTLTKR SFVNMCRDVG YYWLRIIIYI
401: IVSICVGTVY FDVGYSYTSI LARGACGAFI SGFMTFMSIG GFPSFIEEMK VFYRERLNGY YGVAAYILAN FLSSFPFLVA IALTTSTITY NMVKFRPGIS
501: HFVFFFLNIY SCISVIESLM MVVASLVPNF LMGIITGAGI IGIMMMTSGF FRLLSDLPKP VWRYPISYIS YGSWAIQGSY KNDLLGLEFD PLLPGDPKLT
601: GEYVITHMLG IELNHSKWWD LAALFVILIC YRLLFFTVLK FKERASPLFQ TLYAKRTIQQ LEKRPSFRKM PSFPSQRHQS LHSLSSQDGL DSPLH

Best Arabidopsis Sequence Match ( AT3G21090.1 )
(BLAST)

001: MELEGSSSGR RQLPSKLEMS RGAYLAWEDL TVVIPNFSDG PTRRLLQRLN GYAEPGRIMA IMGPSGSGKS TLLDSLAGRL ARNVVMTGNL LLNGKKARLD
101: YGLVAYVTQE DVLLGTLTVR ETITYSAHLR LPSDMSKEEV SDIVEGTIME LGLQDCSDRV IGNWHARGVS GGERKRVSIA LEILTRPQIL FLDEPTSGLD
201: SASAFFVIQA LRNIARDGRT VISSVHQPSS EVFALFDDLF LLSSGESVYF GEAKSAVEFF AESGFPCPKK RNPSDHFLRC INSDFDTVTA TLKGSQRIQE
301: TPATSDPLMN LATSVIKARL VENYKRSKYA KSAKSRIREL SNIEGLEMEI RKGSEATWWK QLRTLTARSF INMCRDVGYY WTRIISYIVV SISVGTIFYD
401: VGYSYTSILA RVSCGGFITG FMTFMSIGGF PSFLEEMKVF YKERLSGYYG VSVYILSNYI SSFPFLVAIS VITGTITYNL VKFRPGFSHY AFFCLNIFFS
501: VSVIESLMMV VASVVPNFLM GLITGAGLIG IIMMTSGFFR LLPDLPKIFW RYPVSYISYG SWAIQGGYKN DFLGLEFEPL FPGEPKMTGE EVIEKVFGVK
601: VTYSKWWDLA AVVAILVCYR LLFFVVLKLR ERAGPALKAI QAKRTMRNLD RRPSFKRMPS LSLSLSSMSS RRHQPLRSLS SQEGLNSPIH Y

Arabidopsis Description

ABCG15ABC transporter G family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWI9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.