Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | KRH24076 | AT1G51500.1 | 15299147 |
| AT4G03560.1 | KRH29048 | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26949 | Soybean | plasma membrane | 95.94 | 95.81 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 33.88 | 68.31 |
| Solyc07g053970.2.1 | Tomato | nucleus | 66.94 | 66.85 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 21.82 | 66.53 |
| CDY61997 | Canola | plasma membrane | 64.5 | 66.48 |
| AT4G03560.1 | Thale cress | plasma membrane | 65.85 | 66.3 |
| CDY21975 | Canola | plasma membrane | 66.26 | 66.26 |
| Bra034219.1-P | Field mustard | plasma membrane | 64.5 | 66.02 |
| CDY48568 | Canola | plasma membrane | 64.23 | 65.92 |
| Bra000820.1-P | Field mustard | plasma membrane | 65.04 | 65.66 |
| KXG33111 | Sorghum | plasma membrane | 60.98 | 59.92 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 60.03 | 59.7 |
| CDY48215 | Canola | plasma membrane | 64.77 | 59.6 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 59.89 | 59.57 |
| Os01t0678500-02 | Rice | plasma membrane | 60.98 | 59.45 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 59.35 | 59.03 |
| PGSC0003DMT400047241 | Potato | extracellular | 15.99 | 58.13 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 26.83 | 56.9 |
| Zm00001d011595_P007 | Maize | plasma membrane | 55.28 | 55.89 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | EntrezGene:100806160 | MapMan:24.3.2.1 | EMBL:ACUP02008411 |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | EnsemblPlantsGene:GLYMA_13G296900 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 |
| GO:GO:0005245 | GO:GO:0005261 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | GO:GO:0086010 | GO:GO:0098655 | UniProt:I1M3S8 |
| InterPro:IPR002048 | InterPro:IPR027359 | InterPro:Ion_trans_dom | EnsemblPlants:KRH22384 | ProteinID:KRH22384 | ProteinID:KRH22384.1 |
| PFAM:PF00520 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | SUPFAM:SSF47473 | SUPFAM:SSF81324 |
| TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI000296872E | InterPro:Volt_channel_dom_sf | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr13:-:39576148..39594946
Molecular Weight (calculated)
85754.2 Da
IEP (calculated)
4.750
GRAVY (calculated)
0.304
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSLLRGES SDQSNRSRGI FRRSDAITYG SNYEKAAAFI DLAEDGVGLP EEILDSPNFQ NYIRFYFIFN KCNLIWSLSY FALIVLNFLE KPLWCKKLTT
101: NSCNDREYFY LGQLPYLTDA ECLIYEGITL VLLIIHTFFP LSYEGSHIYW KNTINQLKVF SLLVLVADVL LYALFLSPLA FDFLPFRIAP YIRVVLFVLN
201: IRELRETITI LVGMLDTYLN VLALWLLFLL FASWVAYVFF EDTIQGKTVF TSYGTTLYQL FLLFTTSNNP DVWVPAYKSS RWYCLFFVLF VLVGVYFVTN
301: LILAVVYDSF KSELVKQVFE KDRLRRTMLD KAFDLLDTHK VSSLNKNQCI RLFEELNKYR TLPKISREDF ELIFDELDDS HDIKINKDEF ADICNAIALK
401: FQKEDVMSYF EYLAFYHSPS SKRLKEFVRS PMFGYLVSFV LVINLVAVII ETTLDIENNS AQKAWQVVEF VFGWIYVIEM VLKIYAFGFE NYWRDGQNRF
501: DFIVTVIIAI GETVTFAVPD DDLPFISNGE WIRYLLLARM LRLIRILMYV KRYRAFVATF LTLIPSLMPY LGIIFCTLCI YCSIGVQIFG GIVNAGNPEL
601: ELTALAENDY LVFNFNDYPN GIVTLFNFLV TATWDEVMTS YKELTGTSWT YLYFISFYLI TVLLLLNLII AFVLEAFFAE MELESSETCE GNGKEVEGDK
701: YRKRSIGTKT RSQRVDALLH HMLSAELCQN EPSSTQTS
101: NSCNDREYFY LGQLPYLTDA ECLIYEGITL VLLIIHTFFP LSYEGSHIYW KNTINQLKVF SLLVLVADVL LYALFLSPLA FDFLPFRIAP YIRVVLFVLN
201: IRELRETITI LVGMLDTYLN VLALWLLFLL FASWVAYVFF EDTIQGKTVF TSYGTTLYQL FLLFTTSNNP DVWVPAYKSS RWYCLFFVLF VLVGVYFVTN
301: LILAVVYDSF KSELVKQVFE KDRLRRTMLD KAFDLLDTHK VSSLNKNQCI RLFEELNKYR TLPKISREDF ELIFDELDDS HDIKINKDEF ADICNAIALK
401: FQKEDVMSYF EYLAFYHSPS SKRLKEFVRS PMFGYLVSFV LVINLVAVII ETTLDIENNS AQKAWQVVEF VFGWIYVIEM VLKIYAFGFE NYWRDGQNRF
501: DFIVTVIIAI GETVTFAVPD DDLPFISNGE WIRYLLLARM LRLIRILMYV KRYRAFVATF LTLIPSLMPY LGIIFCTLCI YCSIGVQIFG GIVNAGNPEL
601: ELTALAENDY LVFNFNDYPN GIVTLFNFLV TATWDEVMTS YKELTGTSWT YLYFISFYLI TVLLLLNLII AFVLEAFFAE MELESSETCE GNGKEVEGDK
701: YRKRSIGTKT RSQRVDALLH HMLSAELCQN EPSSTQTS
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.