Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010426_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | Zm00001d010426_P001 | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33111 | Sorghum | plasma membrane | 89.18 | 86.68 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 80.0 | 78.71 |
| Os01t0678500-02 | Rice | plasma membrane | 81.37 | 78.47 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 79.73 | 78.44 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 79.45 | 78.17 |
| GSMUA_Achr4P15270_001 | Banana | plasma membrane | 36.71 | 65.05 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 31.37 | 62.57 |
| KRH26949 | Soybean | plasma membrane | 56.03 | 55.35 |
| KRH22384 | Soybean | plasma membrane | 55.89 | 55.28 |
| Solyc07g053970.2.1 | Tomato | nucleus | 55.75 | 55.07 |
| AT4G03560.1 | Thale cress | plasma membrane | 53.84 | 53.62 |
| CDY21975 | Canola | plasma membrane | 54.11 | 53.52 |
| CDY61997 | Canola | plasma membrane | 52.47 | 53.49 |
| CDY48568 | Canola | plasma membrane | 52.47 | 53.27 |
| Bra034219.1-P | Field mustard | plasma membrane | 52.47 | 53.12 |
| Bra000820.1-P | Field mustard | plasma membrane | 53.15 | 53.08 |
| CDY48215 | Canola | plasma membrane | 53.01 | 48.25 |
| PGSC0003DMT400047241 | Potato | extracellular | 13.29 | 47.78 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 15.34 | 46.28 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | UniProt:A0A1D6G1L4 | ProteinID:AQK97316.1 |
| InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005245 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | InterPro:IPR002048 |
| InterPro:IPR027359 | InterPro:Ion_trans_dom | PFAM:PF00520 | PFAM:PF13499 | PFscan:PS50222 | PANTHER:PTHR10037 |
| PANTHER:PTHR10037:SF231 | SMART:SM00054 | SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix | InterPro:TPC1 |
| UniParc:UPI0008437902 | InterPro:Volt_channel_dom_sf | EnsemblPlantsGene:Zm00001d011595 | EnsemblPlants:Zm00001d011595_P007 | EnsemblPlants:Zm00001d011595_T007 | SEG:seg |
Description
Two pore calcium channel protein 1
Coordinates
chr8:-:155342607..155376249
Molecular Weight (calculated)
83296.9 Da
IEP (calculated)
4.767
GRAVY (calculated)
0.178
Length
730 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMGELRRSS CTQGIDLDTP GIPGNQRSPQ GGAMTEVEAP LITEVEGVEG RGFCGSASTG GGSSGLGSGV RGTRQYHRRS DALAYGDRYQ KAAALVDLAE
101: DGVGIPEDVL NDTRFERAMR FYFVYLRLDW LWSLNLFALI LLNFLEKPLW CQKYAPHTCD QRDLYFLGQL PYLSKTESLI YEALTLVILV LDIFYPLSYE
201: GLNLFWKNSM NKLKVLLLFI LACDILVFML SSGPFRVAPY IRVVFLIMTI RELRMCAVTL VGIVGTYLNV LALSLLFLLF ASWLAYVTFE DTPQGKTIFT
301: SYGTTLYQMF VLFTTSNNPD VWVPAYKSSR WNALFIVIYV LLGVYFLTNL ILAVIYDSFK EQLAKQLAQM DSIRKSILQK AFDLIDTNGQ GYLNKEQCIS
401: LLDELNKYRS LPKTSREDFE LIFSELDRSG DFKVTSEEFA DLCNTIAIKF QKEPPPSYLE KYPSFYHSPQ CERLKSFVRS RLFEYIVVFV LLVNLIAVVI
501: ETTLDIENSS SQKVWQEVEF VFGWIYVVEM ALKIFSLGFG AYWMEGQNKF DFVITWTICK FIGETLTFAF PSTLPFLSNG ECYEFFGGIV YAGNLKLEET
601: DLFGNDYLLF NFNDYPSGMV TLFNLLVMGN WQVWMESYAH LTGSSWSLVY FISFYLISVL LLLNLIVAFV LEAFFAEMEL EKAGEADTQD STPQGRNKRR
701: SMRVRTKGTM VDILLHHMLS NELDGSQNSD
101: DGVGIPEDVL NDTRFERAMR FYFVYLRLDW LWSLNLFALI LLNFLEKPLW CQKYAPHTCD QRDLYFLGQL PYLSKTESLI YEALTLVILV LDIFYPLSYE
201: GLNLFWKNSM NKLKVLLLFI LACDILVFML SSGPFRVAPY IRVVFLIMTI RELRMCAVTL VGIVGTYLNV LALSLLFLLF ASWLAYVTFE DTPQGKTIFT
301: SYGTTLYQMF VLFTTSNNPD VWVPAYKSSR WNALFIVIYV LLGVYFLTNL ILAVIYDSFK EQLAKQLAQM DSIRKSILQK AFDLIDTNGQ GYLNKEQCIS
401: LLDELNKYRS LPKTSREDFE LIFSELDRSG DFKVTSEEFA DLCNTIAIKF QKEPPPSYLE KYPSFYHSPQ CERLKSFVRS RLFEYIVVFV LLVNLIAVVI
501: ETTLDIENSS SQKVWQEVEF VFGWIYVVEM ALKIFSLGFG AYWMEGQNKF DFVITWTICK FIGETLTFAF PSTLPFLSNG ECYEFFGGIV YAGNLKLEET
601: DLFGNDYLLF NFNDYPSGMV TLFNLLVMGN WQVWMESYAH LTGSSWSLVY FISFYLISVL LLLNLIVAFV LEAFFAEMEL EKAGEADTQD STPQGRNKRR
701: SMRVRTKGTM VDILLHHMLS NELDGSQNSD
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.