Factsheet for Solyc07g053970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g065350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	Solyc11g065350.1.1	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047241	Potato	extracellular	25.85	94.09
VIT_12s0028g03650.t01	Wine grape	plasma membrane	22.6	69.01
VIT_12s0028g03700.t01	Wine grape	cytosol, peroxisome, plasma membrane	33.15	66.94
KRH22384	Soybean	plasma membrane	66.85	66.94
KRH26949	Soybean	plasma membrane	66.31	66.31
CDY48568	Canola	plasma membrane	63.6	65.37
CDY61997	Canola	plasma membrane	63.19	65.22
Bra034219.1-P	Field mustard	plasma membrane	63.6	65.19
CDY21975	Canola	plasma membrane	65.09	65.18
AT4G03560.1	Thale cress	plasma membrane	64.14	64.67
Bra000820.1-P	Field mustard	plasma membrane	63.87	64.57
GSMUA_Achr4P15260_001	Banana	plasma membrane	28.42	60.34
TraesCS3D01G268800.1	Wheat	plasma membrane	60.49	60.24
TraesCS3A01G268700.1	Wheat	plasma membrane	60.35	60.11
TraesCS3B01G303100.1	Wheat	plasma membrane	60.35	60.11
KXG33111	Sorghum	plasma membrane	60.76	59.79
Os01t0678500-02	Rice	plasma membrane	60.76	59.31
CDY48215	Canola	plasma membrane	63.6	58.6
Zm00001d011595_P007	Maize	plasma membrane	55.07	55.75

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.287.70	Gene3D:1.20.120.350	MapMan:24.3.2.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
GO:GO:0000325	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005245	GO:GO:0005261
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886	GO:GO:0006629
GO:GO:0006810	GO:GO:0006811	GO:GO:0006816	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009845	GO:GO:0009987
GO:GO:0010119	GO:GO:0016020	GO:GO:0016021	GO:GO:0019722	GO:GO:0034220	GO:GO:0042802
GO:GO:0055085	GO:GO:0070588	GO:GO:0080141	GO:GO:0086010	GO:GO:0098655	InterPro:IPR002048
InterPro:IPR027359	InterPro:Ion_trans_dom	UniProt:K4CFU2	PFAM:PF00520	PFscan:PS50222	PANTHER:PTHR10037
PANTHER:PTHR10037:SF231	SMART:SM00054	SUPFAM:SSF47473	SUPFAM:SSF81324	EnsemblPlantsGene:Solyc07g053970.2	EnsemblPlants:Solyc07g053970.2.1
TMHMM:TMhelix	InterPro:TPC1	UniParc:UPI000276C207	InterPro:Volt_channel_dom_sf	SEG:seg	:

Description

Two pore calcium channel protein 1 [Source:Projected from Arabidopsis thaliana (AT4G03560) UniProtKB/Swiss-Prot;Acc:Q94KI8]

Coordinates

chr7:-:62362157..62383026

Molecular Weight (calculated)

85659.6 Da

IEP (calculated)

4.709

GRAVY (calculated)

0.255

Length

739 amino acids

Sequence
(BLAST)

001: MEESLLPGES SSNSWGRIRN RRRVGSMFDP RDAIAHGSAY QKAAALVDLA EDGVGLPEEI LEGTSFEKAA QLYFMFTRFD FLWSLNYLAL VLINFFEKPL
101: WCSRHLAESC NNRDYYYLGQ LPFLTGAESL IYEGVTLLLL VIHILFPISY EGFHLYWRSL LNRLKVVLLL ILVADIVVYI LFLADFYYLP FRIASYLRVV
201: FFILNIRELR DSFFILAGMF RTYLNVVALT ALFLLFSSWL AYVFFEDTQQ GKTMFTSYGT TLYQMFVLFT TSNNPDVWIP AYKESRWYCL FFVLYVLLGV
301: YFVTNLVLAV VYDSFKSELV KQVAEKDRRK LRTLKKAFSL IDDSNTGVLD KKQCILLFEE LNKYRTLPKI SGDDFESIFN ELDDTGDFKI NLEEFADLCT
401: AIGLRFQKED SLPIFEACPN FYHSAASEKL RDFVRGDTFE YIIVSVLLVN LVAVIIETTL DIQNNSGQTF WQKVEFTFGW LYVIEMALKV YTYGFENYWR
501: DGQNQFDFIV TWVIVIGETA TFVAPDDLTF LSNGEWIRYL LIARMLRLMR LLLHVERYRA FVATFLTLIP SLMPYLGTIF CILCFYCSLG LQIFGGIVNA
601: GNPNLAQTEL SDNDYLLFNF NDYPSGMVTV FNILVMGNWQ VWMQSYKELT GTAWTYVYFV SFYLISVLWL LNLIVAFVLE AFQAEMDLEA AANCADGDDK
701: ESRSERRRNV GTKTRSQRVD FLLHHMLSSE LTECSHDDP

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.