Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- vacuole 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra030437.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | Bra030437.1-P | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034219.1-P | Field mustard | plasma membrane | 93.02 | 94.31 |
| AT4G03560.1 | Thale cress | plasma membrane | 91.52 | 91.27 |
| CDY48215 | Canola | plasma membrane | 99.04 | 90.27 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 22.43 | 67.77 |
| KRH22384 | Soybean | plasma membrane | 65.66 | 65.04 |
| KRH26949 | Soybean | plasma membrane | 65.12 | 64.41 |
| Solyc07g053970.2.1 | Tomato | nucleus | 64.57 | 63.87 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 31.6 | 63.11 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 27.91 | 58.62 |
| KXG33111 | Sorghum | plasma membrane | 59.1 | 57.52 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 57.87 | 57.01 |
| Os01t0678500-02 | Rice | plasma membrane | 58.96 | 56.94 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 57.73 | 56.87 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 57.59 | 56.74 |
| Zm00001d011595_P007 | Maize | plasma membrane | 53.08 | 53.15 |
| PGSC0003DMT400047241 | Potato | extracellular | 14.23 | 51.23 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | EnsemblPlantsGene:Bra000820 | EnsemblPlants:Bra000820.1 |
| EnsemblPlants:Bra000820.1-P | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 |
| GO:GO:0005245 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 |
| InterPro:IPR002048 | InterPro:IPR027359 | InterPro:Ion_trans_dom | UniProt:M4C9E1 | PFAM:PF00520 | PFscan:PS50222 |
| PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | SMART:SM00054 | SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix |
| InterPro:TPC1 | UniParc:UPI000254051E | InterPro:Volt_channel_dom_sf | SEG:seg | : | : |
Description
AT4G03560 (E=0.0) ATTPC1, TPC1, ATCCH1, FOU2 | ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel
Coordinates
chrA03:-:13339419..13344344
Molecular Weight (calculated)
84749.8 Da
IEP (calculated)
4.591
GRAVY (calculated)
0.219
Length
731 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPLIGRES RGGGTDRIVR RSEAITHGST FQIAAALVDL AEDGIGLPEQ ILDQSSFGEA AKYYFIFTRL DLIWSLNYFA LILLNFFEQP LWCENKPTPS
101: CKDRDYYYLG ELPYLTNAES IIFEASTEPM SSWPFIFPID GSRIFWTSRL NLVKVACVVV LIVDVLVDFL YLSPLAFDFL PFRVAPYVRV IIFILSIRGL
201: RDSLILLSGM LGTYLNILAL WMLFLLFASW IAFVMFEDTK QGLTVFTSYG ATLYQMFILF TTSNNPDVWI RAYKSSRWSS LFFVLYVLIG VYFVTNLILA
301: VVYDSFKEQL AKQVIGMDQM KRRMLEKAFG LIDTDRTGEI NKEQCIKLFE QLTNYRTLPK ISKEEFGLIF DELDDTRDFK INKDEFADLC QAIALRFQKE
401: EVPSLFENFP EIYHSALSQQ LRAFVRSPNF GYAISFILVL NFIAVIVETT LDIEESSAQK PWQVAEFVFG WIYVMEMALK IYSYGFENYW RDGQNRFDFL
501: VTWVIVIGET ATFITPDENT FFSNGEWIRY LLLARMLRLI RLLMHVQQYR AFIATFITLI PSLMPYLGTI FCVLCIYCSI GVQVFGGLVN AGNKKLFETE
601: LAENDYLLFN FNDYPNGMVT LFNLLVMGNW QAWMESYKDL TGTWWSITYF VSFYIITVLL LLNLIVAFVL EAFFTELDLE EEEKCQGQDS QERRNRRRYA
701: GSKSRSQRVD TLLHHMLGDE LSKPECSTPD T
101: CKDRDYYYLG ELPYLTNAES IIFEASTEPM SSWPFIFPID GSRIFWTSRL NLVKVACVVV LIVDVLVDFL YLSPLAFDFL PFRVAPYVRV IIFILSIRGL
201: RDSLILLSGM LGTYLNILAL WMLFLLFASW IAFVMFEDTK QGLTVFTSYG ATLYQMFILF TTSNNPDVWI RAYKSSRWSS LFFVLYVLIG VYFVTNLILA
301: VVYDSFKEQL AKQVIGMDQM KRRMLEKAFG LIDTDRTGEI NKEQCIKLFE QLTNYRTLPK ISKEEFGLIF DELDDTRDFK INKDEFADLC QAIALRFQKE
401: EVPSLFENFP EIYHSALSQQ LRAFVRSPNF GYAISFILVL NFIAVIVETT LDIEESSAQK PWQVAEFVFG WIYVMEMALK IYSYGFENYW RDGQNRFDFL
501: VTWVIVIGET ATFITPDENT FFSNGEWIRY LLLARMLRLI RLLMHVQQYR AFIATFITLI PSLMPYLGTI FCVLCIYCSI GVQVFGGLVN AGNKKLFETE
601: LAENDYLLFN FNDYPNGMVT LFNLLVMGNW QAWMESYKDL TGTWWSITYF VSFYIITVLL LLNLIVAFVL EAFFTELDLE EEEKCQGQDS QERRNRRRYA
701: GSKSRSQRVD TLLHHMLGDE LSKPECSTPD T
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.