Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61997 | Canola | plasma membrane | 90.59 | 92.74 |
| CDY48568 | Canola | plasma membrane | 90.86 | 92.63 |
| CDY21975 | Canola | plasma membrane | 93.18 | 92.55 |
| Bra034219.1-P | Field mustard | plasma membrane | 90.59 | 92.09 |
| Bra000820.1-P | Field mustard | plasma membrane | 91.27 | 91.52 |
| CDY48215 | Canola | plasma membrane | 90.86 | 83.04 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 22.1 | 66.94 |
| KRH22384 | Soybean | plasma membrane | 66.3 | 65.85 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 32.88 | 65.85 |
| KRH26949 | Soybean | plasma membrane | 65.48 | 64.95 |
| Solyc07g053970.2.1 | Tomato | nucleus | 64.67 | 64.14 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 27.69 | 58.33 |
| KXG33111 | Sorghum | plasma membrane | 59.48 | 58.06 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 58.39 | 57.68 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 58.39 | 57.68 |
| Os01t0678500-02 | Rice | plasma membrane | 59.35 | 57.46 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 58.12 | 57.41 |
| PGSC0003DMT400047241 | Potato | extracellular | 15.28 | 55.17 |
| Zm00001d011595_P007 | Maize | plasma membrane | 53.62 | 53.84 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | PDB:5DQQ | PDB:5E1J |
| PDB:5TUA | EntrezGene:825655 | ProteinID:AAD11598.1 | ProteinID:AAD15312.1 | EMBL:AB053952 | ProteinID:AEE82337.1 |
| EMBL:AF360372 | EMBL:AK316725 | ArrayExpress:AT4G03560 | EnsemblPlantsGene:AT4G03560 | RefSeq:AT4G03560 | TAIR:AT4G03560 |
| RefSeq:AT4G03560-TAIR-G | EnsemblPlants:AT4G03560.1 | TAIR:AT4G03560.1 | Symbol:ATTPC1 | Unigene:At.3957 | UniProt:B9DFD5 |
| ProteinID:CAB77841.1 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0000325 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005245 | GO:GO:0005262 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006629 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0006816 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009845 | GO:GO:0009987 | GO:GO:0010119 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019722 | GO:GO:0034220 | GO:GO:0034765 | GO:GO:0042802 | GO:GO:0055085 |
| GO:GO:0070588 | GO:GO:0080141 | GO:GO:0086010 | InterPro:IPR002048 | InterPro:IPR027359 | InterPro:Ion_trans_dom |
| RefSeq:NP_567258.1 | PFAM:PF00520 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | UniProt:Q94KI8 | SMART:SM00054 |
| SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI00000AB4D0 | InterPro:Volt_channel_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
Coordinates
chr4:+:1579929..1585980
Molecular Weight (calculated)
84877.9 Da
IEP (calculated)
4.620
GRAVY (calculated)
0.244
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.