Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- vacuole 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | CDX87823 | AT1G51500.1 | 15299147 |
| AT4G03560.1 | CDY43913 | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48568 | Canola | plasma membrane | 95.11 | 94.71 |
| CDY21975 | Canola | plasma membrane | 94.83 | 92.01 |
| AT4G03560.1 | Thale cress | plasma membrane | 92.74 | 90.59 |
| CDY48215 | Canola | plasma membrane | 99.3 | 88.65 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 22.91 | 67.77 |
| KRH22384 | Soybean | plasma membrane | 66.48 | 64.5 |
| KRH26949 | Soybean | plasma membrane | 65.92 | 63.87 |
| Solyc07g053970.2.1 | Tomato | nucleus | 65.22 | 63.19 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 31.42 | 61.48 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 28.49 | 58.62 |
| KXG33111 | Sorghum | plasma membrane | 59.78 | 56.99 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 58.52 | 56.47 |
| Os01t0678500-02 | Rice | plasma membrane | 59.64 | 56.41 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 58.38 | 56.33 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 58.24 | 56.2 |
| Zm00001d011595_P007 | Maize | plasma membrane | 53.49 | 52.47 |
| PGSC0003DMT400047241 | Potato | extracellular | 13.83 | 48.77 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | GO:A0A078J6A6 | UniProt:A0A078J6A6 |
| EnsemblPlants:CDY61997 | ProteinID:CDY61997 | ProteinID:CDY61997.1 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005245 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | EnsemblPlantsGene:GSBRNA2T00035807001 | InterPro:IPR002048 | InterPro:IPR027359 |
| InterPro:Ion_trans_dom | PFAM:PF00520 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | SMART:SM00054 |
| SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI0004EDFD46 | InterPro:Volt_channel_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g57170DBnaA03g57170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6A6]
Coordinates
chrLK034076:+:13486..18562
Molecular Weight (calculated)
83098.8 Da
IEP (calculated)
4.675
GRAVY (calculated)
0.217
Length
716 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPLIGRES RGGGTDRIVR RSEAITHGST FQIAAALVDL AEDGIGLPEQ ILDQSSFGEA AKYYFIFTRL DLIWSLNYFA LILLNFFEQP LWCENKPTPS
101: CKDRDYYYLG ELPYLTNAES IIFEARSRIF WTSRLNLVKV ACVVVLIVDV LVDFLYLSPL AFDFLPFRVA PYVRVIIFIL SIRGLRDSLI LLSGMLGTYL
201: NILALWMLFL LFASWIAFVM FEDTKQGLTV FTSYGATLYQ MFILFTTSNN PDVWIRAYKS SRWSSLFFVL YVLIGVYFVT NLILAVVYDS FKEQLAKQVI
301: GMDQMKRRML EKAFGLIDTD RTGEINKDQC IKLFEQLTNY RTLPKISKEE FGLIFDELDD TRDFKINKDE FADLCQAIAL RFQKEEVPSL FENFPEIYHS
401: ALSQQLRAFV RSPNFGYAIS FILVLNFIAV IVETTLDIEE SSAQKPWQVA EFVFGWIYVM EMALKIYSYG FENYWRDGQN RFDFLVTWVI VIGETATFIT
501: PDENTFFSNG EWIRYLLLAR MLRLIRLLMH VQQYRAFIAT FITLIPSLMP YLGTIFCVLC IYCSIGVQVF GGLVNAGNKK LFETELAEND YLLFNFNDYP
601: NGMVTLFNLL VMGNWQAWME SYKDLTGTWW SITYFVSFYI ITVLLLLNLI VAFVLEAFFT ELDLEEEEKC QGQDSQERRN RRRYAGSKSR SQRVDTLLHH
701: MLGDELSKPE CSTPDT
101: CKDRDYYYLG ELPYLTNAES IIFEARSRIF WTSRLNLVKV ACVVVLIVDV LVDFLYLSPL AFDFLPFRVA PYVRVIIFIL SIRGLRDSLI LLSGMLGTYL
201: NILALWMLFL LFASWIAFVM FEDTKQGLTV FTSYGATLYQ MFILFTTSNN PDVWIRAYKS SRWSSLFFVL YVLIGVYFVT NLILAVVYDS FKEQLAKQVI
301: GMDQMKRRML EKAFGLIDTD RTGEINKDQC IKLFEQLTNY RTLPKISKEE FGLIFDELDD TRDFKINKDE FADLCQAIAL RFQKEEVPSL FENFPEIYHS
401: ALSQQLRAFV RSPNFGYAIS FILVLNFIAV IVETTLDIEE SSAQKPWQVA EFVFGWIYVM EMALKIYSYG FENYWRDGQN RFDFLVTWVI VIGETATFIT
501: PDENTFFSNG EWIRYLLLAR MLRLIRLLMH VQQYRAFIAT FITLIPSLMP YLGTIFCVLC IYCSIGVQVF GGLVNAGNKK LFETELAEND YLLFNFNDYP
601: NGMVTLFNLL VMGNWQAWME SYKDLTGTWW SITYFVSFYI ITVLLLLNLI VAFVLEAFFT ELDLEEEEKC QGQDSQERRN RRRYAGSKSR SQRVDTLLHH
701: MLGDELSKPE CSTPDT
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.