Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- vacuole 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | CDX87823 | AT1G51500.1 | 15299147 |
| AT4G03560.1 | CDY43913 | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48568 | Canola | plasma membrane | 95.66 | 98.19 |
| CDY61997 | Canola | plasma membrane | 92.01 | 94.83 |
| AT4G03560.1 | Thale cress | plasma membrane | 92.55 | 93.18 |
| CDY48215 | Canola | plasma membrane | 92.41 | 85.04 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 21.95 | 66.94 |
| KRH22384 | Soybean | plasma membrane | 66.26 | 66.26 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 32.66 | 65.85 |
| KRH26949 | Soybean | plasma membrane | 65.58 | 65.49 |
| Solyc07g053970.2.1 | Tomato | nucleus | 65.18 | 65.09 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 27.51 | 58.33 |
| KXG33111 | Sorghum | plasma membrane | 59.21 | 58.19 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 58.4 | 58.09 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 58.27 | 57.95 |
| Os01t0678500-02 | Rice | plasma membrane | 59.35 | 57.86 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 58.13 | 57.82 |
| PGSC0003DMT400047241 | Potato | extracellular | 15.45 | 56.16 |
| Zm00001d011595_P007 | Maize | plasma membrane | 53.52 | 54.11 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | GO:A0A078G686 | UniProt:A0A078G686 |
| EnsemblPlants:CDY21975 | ProteinID:CDY21975 | ProteinID:CDY21975.1 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005245 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | EnsemblPlantsGene:GSBRNA2T00018310001 | InterPro:IPR002048 | InterPro:IPR027359 |
| InterPro:Ion_trans_dom | PFAM:PF00520 | PFAM:PF13499 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 |
| SMART:SM00054 | SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI0004EF3C41 |
| InterPro:Volt_channel_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC09g00810DBnaC09g00810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G686]
Coordinates
chrLK032126:+:448401..453319
Molecular Weight (calculated)
85476.7 Da
IEP (calculated)
4.724
GRAVY (calculated)
0.225
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPLIGRES RGGGGGGTDR IVRRSEAITH GTTFQKAAAL VDLAEDGIGL PEQILDQSSF GESAKYYFFY TRLDLIWSLN YFALILINFF EQPLWCENKP
101: TPSCKDRDYY YLGELPYLTN AESIIFEAIT LVILLVHTFF PISYEGSRIF WTSRLNLVKV ACVVVLIVDV LVDILYLSPV AFDFLPFRIA PYVRVIIFIL
201: SIRELRDSLV LLSGMLGTYL NILALWMLFL LFASWIAFVM FEDTQQGLTV FTSYGATLYQ MFILFTTSNN PDVWIRAYKS SRWSSLFFVL YVLIGVYFVT
301: NLILAVVYDS FKEQLAKQVS GMDQMKRRML EKAFALIDKD KTGQIDKEQC IKLFEQLTNY RTLPKISKEE FGLIFDELDD TRDFKINKDE FADLCQAIAL
401: RFQKEEVPSL FENFPQIYHS ALSQQLRAFV RSPRFGYAIS FILVLNFIAV VVETTLDIEE SSAQKPWQVA EFVFGWIYVL EMALKIYSYG FENYWRDGQN
501: RFDFIVTWVI VIGETATFIT PDENTFFSNG EWIRYLLLAR MLRLIRLLMH VQRYRAFIAT FITLIPSLMP YLGTIFCVLC IYCSIGVQVF GGLVNAGNKQ
601: LFKTEMAEED YLLFNFNDYP NGMVTLFNLL VMGNWQVWME SYKDLTGTWW SITYFVSFYI ITVLLLLNLI VAFVLEAFFT ELDLEEEEKC EGQDSQERRN
701: RRRSAGSKSR SQRVDTLLHH MLGDELSKPE CSTTATDT
101: TPSCKDRDYY YLGELPYLTN AESIIFEAIT LVILLVHTFF PISYEGSRIF WTSRLNLVKV ACVVVLIVDV LVDILYLSPV AFDFLPFRIA PYVRVIIFIL
201: SIRELRDSLV LLSGMLGTYL NILALWMLFL LFASWIAFVM FEDTQQGLTV FTSYGATLYQ MFILFTTSNN PDVWIRAYKS SRWSSLFFVL YVLIGVYFVT
301: NLILAVVYDS FKEQLAKQVS GMDQMKRRML EKAFALIDKD KTGQIDKEQC IKLFEQLTNY RTLPKISKEE FGLIFDELDD TRDFKINKDE FADLCQAIAL
401: RFQKEEVPSL FENFPQIYHS ALSQQLRAFV RSPRFGYAIS FILVLNFIAV VVETTLDIEE SSAQKPWQVA EFVFGWIYVL EMALKIYSYG FENYWRDGQN
501: RFDFIVTWVI VIGETATFIT PDENTFFSNG EWIRYLLLAR MLRLIRLLMH VQRYRAFIAT FITLIPSLMP YLGTIFCVLC IYCSIGVQVF GGLVNAGNKQ
601: LFKTEMAEED YLLFNFNDYP NGMVTLFNLL VMGNWQVWME SYKDLTGTWW SITYFVSFYI ITVLLLLNLI VAFVLEAFFT ELDLEEEEKC EGQDSQERRN
701: RRRSAGSKSR SQRVDTLLHH MLGDELSKPE CSTTATDT
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.