Factsheet for GSMUA_Achr4P15260_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00380_001
GSMUA_Achr4P00390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	GSMUA_Achr4P00380_001	AT1G51500.1	15299147
AT4G03560.1	GSMUA_Achr4P00390_001	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g03650.t01	Wine grape	plasma membrane	47.41	68.18
CDY61997	Canola	plasma membrane	58.62	28.49
Bra034219.1-P	Field mustard	plasma membrane	58.91	28.43
Solyc07g053970.2.1	Tomato	nucleus	60.34	28.42
CDY48568	Canola	plasma membrane	58.62	28.37
Bra000820.1-P	Field mustard	plasma membrane	58.62	27.91
AT4G03560.1	Thale cress	plasma membrane	58.33	27.69
CDY21975	Canola	plasma membrane	58.33	27.51
KRH22384	Soybean	plasma membrane	56.9	26.83
KRH26949	Soybean	plasma membrane	56.03	26.39
CDY48215	Canola	plasma membrane	58.62	25.44
PGSC0003DMT400047241	Potato	extracellular	5.75	9.85
GSMUA_Achr4P15270_001	Banana	plasma membrane	4.89	4.13
VIT_12s0028g03700.t01	Wine grape	cytosol, peroxisome, plasma membrane	4.02	3.83

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.20.120.350	MapMan:24.3.2.1	GO:GO:0000325	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005245	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0006629
GO:GO:0006810	GO:GO:0006811	GO:GO:0006816	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009845	GO:GO:0009987
GO:GO:0010119	GO:GO:0016020	GO:GO:0016021	GO:GO:0019722	GO:GO:0034220	GO:GO:0042802
GO:GO:0055085	GO:GO:0070588	GO:GO:0080141	EnsemblPlantsGene:GSMUA_Achr4G15260_001	EnsemblPlants:GSMUA_Achr4P15260_001	EnsemblPlants:GSMUA_Achr4T15260_001
InterPro:IPR027359	InterPro:Ion_trans_dom	UniProt:M0SP41	PFAM:PF00520	PANTHER:PTHR10037	PANTHER:PTHR10037:SF231
SUPFAM:SSF81324	TMHMM:TMhelix	InterPro:TPC1	UniParc:UPI0002948067	InterPro:Volt_channel_dom_sf	SEG:seg

Description

Two pore calcium channel protein 1B [Source:GMGC_GENE;Acc:GSMUA_Achr4G15260_001]

Coordinates

chr4:-:11502961..11514202

Molecular Weight (calculated)

39861.8 Da

IEP (calculated)

5.371

GRAVY (calculated)

0.384

Length

348 amino acids

Sequence
(BLAST)

001: MGRTCCLTCF PFDMAWHSNA FDSSIISIVL FSKEKKTGGI NPTNRITEID YIVQMIYVGG CIIKSSVLVN FTEHIAHDLT SAQVSFLFGW IYVLEMALKI
101: FSFGFDAYWM DGQNRFDFVI TWIIVVGETM TFAFPSVLPF LSNGEWIRYL LIARMLRLIR LLLHVQRYKA FVATFLTLIP SLMPYLGTIF CVQCLYCSLG
201: VQLFGGIVNA GNPKLEMTDL SDNDYLLFNF NDYPNGMVTL FNLLVMGNWQ VWMQSYKDLT GTSWSLVYFV SFYLITVLLL LNLVVAFVLE AFFAEMELES
301: ASEPQEEKED PAKKERRRRV GVKTRSRTVD ILLHHMLSAE LDSQSCEA

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.