Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G03560.1 | CDX87823 | AT1G51500.1 | 15299147 |
| AT4G03560.1 | CDY43913 | AT1G51500.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61997 | Canola | plasma membrane | 88.65 | 99.3 |
| Bra000820.1-P | Field mustard | plasma membrane | 90.27 | 99.04 |
| CDY48568 | Canola | plasma membrane | 84.79 | 94.58 |
| CDY21975 | Canola | plasma membrane | 85.04 | 92.41 |
| AT4G03560.1 | Thale cress | plasma membrane | 83.04 | 90.86 |
| VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 20.45 | 67.77 |
| KRH22384 | Soybean | plasma membrane | 59.6 | 64.77 |
| KRH26949 | Soybean | plasma membrane | 59.23 | 64.28 |
| Solyc07g053970.2.1 | Tomato | nucleus | 58.6 | 63.6 |
| VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 28.43 | 62.3 |
| GSMUA_Achr4P15260_001 | Banana | plasma membrane | 25.44 | 58.62 |
| KXG33111 | Sorghum | plasma membrane | 53.74 | 57.39 |
| Os01t0678500-02 | Rice | plasma membrane | 53.62 | 56.8 |
| TraesCS3B01G303100.1 | Wheat | plasma membrane | 52.49 | 56.74 |
| TraesCS3D01G268800.1 | Wheat | plasma membrane | 52.37 | 56.6 |
| TraesCS3A01G268700.1 | Wheat | plasma membrane | 52.24 | 56.47 |
| Zm00001d011595_P007 | Maize | plasma membrane | 48.25 | 53.01 |
| PGSC0003DMT400047241 | Potato | extracellular | 12.84 | 50.74 |
Protein Annotations
| Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | MapMan:24.3.2.1 | GO:A0A078IBE6 | UniProt:A0A078IBE6 |
| EnsemblPlants:CDY48215 | ProteinID:CDY48215 | ProteinID:CDY48215.1 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005244 | GO:GO:0005245 | GO:GO:0005488 | GO:GO:0005509 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | EnsemblPlantsGene:GSBRNA2T00089043001 | InterPro:IPR002048 | InterPro:IPR027359 |
| InterPro:Ion_trans_dom | PFAM:PF00520 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | SMART:SM00054 |
| SUPFAM:SSF47473 | SUPFAM:SSF81324 | TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI0004EF2997 | InterPro:Volt_channel_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng16060DBnaCnng16060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBE6]
Coordinates
chrLK032759:+:134298..139823
Molecular Weight (calculated)
93244.4 Da
IEP (calculated)
4.665
GRAVY (calculated)
0.273
Length
802 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPLIGRQS RGGGTDRIVR RSEAITHGST FQIAAALVDL AEDGIGLPEQ ILDQSSFGEA AKYYFIFTRL DLIWSLNYFA LILLNFFEQP LWCENKPTPS
101: CKDRDYYYLG ELPYLTNAES IIFEASTELM SSWPFIFTID GSRIFWTSRL NLVKVACVVV LIVDVLVDFL YLSPLAFDFL PFRVAPYVRV IIFILSIRGL
201: RDSLILLSGM LGTYLNILAL WMLFLLFASW IAFVMFEDTK QGLTVFTSYG ATLYQMFILF TTSNNPDVWI RAYKSSRWSS LFFVLYVLIG VYFVTNLILA
301: VVYDSFKEQL AKQVIGMDQM KRRMLEKAFG LIDTDRTGEI NKEQCIKLFE QLTNYRTLPK ISKEEFGLIF DELDDTRDFK INKDEFADLC QAIALRFQKE
401: EVPSLFENFP EIYHSALSQQ LRAFVRSPNF GYAISFILVL NFIAVIVETT LDIEESSAQK PWQVAEFVFG WIYVMEMALK IYSYGFENYW RDGQNRFDFL
501: VTWVIVIGET ATFITPDENT FFSNGEWIRY LLLARMLRLI RLLMHVQQYR AFIATFITLI PSLMPYLGTI FCVLCIYCSI GVQVFGGLVN AGNKKLFETE
601: LAENDYLLFN FNDYPNGMVT LFNLLVMGNW QAWMESYKDL TGTWWSITYF VSFYIITVLL LLNLKTKLSC VMFFYLLFNF NDYPNGMVTL FNLLVMGNWQ
701: AWMESYKDLT GTWWSITYFV SFYIITVLLL LNLIVAFVLE AFFTELDLEE EEKCQGQDSK ERRNRRRYAG SKSRSQRVDT LLHHMLGDEL SKPECSTPDT
801: VI
101: CKDRDYYYLG ELPYLTNAES IIFEASTELM SSWPFIFTID GSRIFWTSRL NLVKVACVVV LIVDVLVDFL YLSPLAFDFL PFRVAPYVRV IIFILSIRGL
201: RDSLILLSGM LGTYLNILAL WMLFLLFASW IAFVMFEDTK QGLTVFTSYG ATLYQMFILF TTSNNPDVWI RAYKSSRWSS LFFVLYVLIG VYFVTNLILA
301: VVYDSFKEQL AKQVIGMDQM KRRMLEKAFG LIDTDRTGEI NKEQCIKLFE QLTNYRTLPK ISKEEFGLIF DELDDTRDFK INKDEFADLC QAIALRFQKE
401: EVPSLFENFP EIYHSALSQQ LRAFVRSPNF GYAISFILVL NFIAVIVETT LDIEESSAQK PWQVAEFVFG WIYVMEMALK IYSYGFENYW RDGQNRFDFL
501: VTWVIVIGET ATFITPDENT FFSNGEWIRY LLLARMLRLI RLLMHVQQYR AFIATFITLI PSLMPYLGTI FCVLCIYCSI GVQVFGGLVN AGNKKLFETE
601: LAENDYLLFN FNDYPNGMVT LFNLLVMGNW QAWMESYKDL TGTWWSITYF VSFYIITVLL LLNLKTKLSC VMFFYLLFNF NDYPNGMVTL FNLLVMGNWQ
701: AWMESYKDLT GTWWSITYFV SFYIITVLLL LNLIVAFVLE AFFTELDLEE EEKCQGQDSK ERRNRRRYAG SKSRSQRVDT LLHHMLGDEL SKPECSTPDT
801: VI
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.