Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- mitochondrion 2
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G03560.1 | KRH24076 | AT1G51500.1 | 15299147 |
AT4G03560.1 | KRH29048 | AT1G51500.1 | 15299147 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH22384 | Soybean | plasma membrane | 95.81 | 95.94 |
VIT_12s0028g03700.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 33.29 | 67.21 |
Solyc07g053970.2.1 | Tomato | nucleus | 66.31 | 66.31 |
VIT_12s0028g03650.t01 | Wine grape | plasma membrane | 21.65 | 66.12 |
CDY61997 | Canola | plasma membrane | 63.87 | 65.92 |
CDY21975 | Canola | plasma membrane | 65.49 | 65.58 |
AT4G03560.1 | Thale cress | plasma membrane | 64.95 | 65.48 |
Bra034219.1-P | Field mustard | plasma membrane | 63.87 | 65.46 |
CDY48568 | Canola | plasma membrane | 63.6 | 65.37 |
Bra000820.1-P | Field mustard | plasma membrane | 64.41 | 65.12 |
Os01t0678500-02 | Rice | plasma membrane | 61.57 | 60.11 |
KXG33111 | Sorghum | plasma membrane | 60.89 | 59.92 |
TraesCS3B01G303100.1 | Wheat | plasma membrane | 60.08 | 59.84 |
TraesCS3D01G268800.1 | Wheat | plasma membrane | 59.95 | 59.7 |
TraesCS3A01G268700.1 | Wheat | plasma membrane | 59.54 | 59.3 |
CDY48215 | Canola | plasma membrane | 64.28 | 59.23 |
PGSC0003DMT400047241 | Potato | extracellular | 15.56 | 56.65 |
GSMUA_Achr4P15260_001 | Banana | plasma membrane | 26.39 | 56.03 |
Zm00001d011595_P007 | Maize | plasma membrane | 55.35 | 56.03 |
Protein Annotations
Gene3D:1.10.238.10 | Gene3D:1.10.287.70 | Gene3D:1.20.120.350 | EntrezGene:100819307 | MapMan:24.3.2.1 | EMBL:ACUP02007760 |
InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | EnsemblPlantsGene:GLYMA_12G204400 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 |
GO:GO:0005245 | GO:GO:0005261 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005623 |
GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
GO:GO:0034220 | GO:GO:0055085 | GO:GO:0070588 | GO:GO:0086010 | GO:GO:0098655 | InterPro:IPR002048 |
InterPro:IPR027359 | InterPro:Ion_trans_dom | UniProt:K7LW29 | EnsemblPlants:KRH26949 | ProteinID:KRH26949 | ProteinID:KRH26949.1 |
PFAM:PF00520 | PFscan:PS50222 | PANTHER:PTHR10037 | PANTHER:PTHR10037:SF231 | SUPFAM:SSF47473 | SUPFAM:SSF81324 |
TMHMM:TMhelix | InterPro:TPC1 | UniParc:UPI000294885F | InterPro:Volt_channel_dom_sf | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr12:+:36473422..36498915
Molecular Weight (calculated)
85899.4 Da
IEP (calculated)
4.710
GRAVY (calculated)
0.318
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQSLLLRGE SSDQSYQSRG IFRRSDAIAY GSNYEKAAAF IDLAEDGVGL PEEILDSPNF QNYIRFYFIF TKCNLIWSLS YFALIVLNFL EKPLWCKKLT
101: TNSCNDREYF FLGQLPYLTD AECLIYEGIT LVLLIIHTFF PLSYEGSRIY WKNTINQLKV FSLLVLVADV MLYALFLSPL AFDFLPFRIA PYIRVVLFVL
201: NIRELRETII ILVGMLDTYL NVLALWLLFL LFASWVAYVF FEDTIQGKTV FTSYGTTLYQ LFLLFTTSNN PDVWVPAYKS SRWYCLFFIL FVLVGVYFVT
301: NLILAVVYDS FKSELVKQVF EKDCLRRNVL DKAFDLLDTH KVSSLNKNQC IRLFEELNKY RTLPKISRED FELIFDELDD SHDIKINKDE FADICNAIAL
401: KFQKEDVMSY FEYLSFYHSP SSKRLKEFVR SPMFGYLVSF VLVLNLVAVI IETTLDIENN SAQKVWQMVE FVFGWVYVIE MVLKIYAYGF ENYWRDGQNR
501: FDFIVTVTIA IGETVTFAVP DDDLPFISNG EWIRYLLLAR MLRLIRILMY VKRYRAFVAT LLTLIPSLMP YLGIIFCTLC IYCSIGVQIF GGIVNAGNPE
601: LELTALAEND YLVFNFNDYP NGIVTLFNFL VTATWDEVMT SYKELTGTSW TYLYFISFYL ITVLLLLNLI IAFVLEAFFA EMELESSETC EGNDKEVEGD
701: KYRKRSIGTK TRSQRVDALL HHMLSAELCQ NESSSTQTS
101: TNSCNDREYF FLGQLPYLTD AECLIYEGIT LVLLIIHTFF PLSYEGSRIY WKNTINQLKV FSLLVLVADV MLYALFLSPL AFDFLPFRIA PYIRVVLFVL
201: NIRELRETII ILVGMLDTYL NVLALWLLFL LFASWVAYVF FEDTIQGKTV FTSYGTTLYQ LFLLFTTSNN PDVWVPAYKS SRWYCLFFIL FVLVGVYFVT
301: NLILAVVYDS FKSELVKQVF EKDCLRRNVL DKAFDLLDTH KVSSLNKNQC IRLFEELNKY RTLPKISRED FELIFDELDD SHDIKINKDE FADICNAIAL
401: KFQKEDVMSY FEYLSFYHSP SSKRLKEFVR SPMFGYLVSF VLVLNLVAVI IETTLDIENN SAQKVWQMVE FVFGWVYVIE MVLKIYAYGF ENYWRDGQNR
501: FDFIVTVTIA IGETVTFAVP DDDLPFISNG EWIRYLLLAR MLRLIRILMY VKRYRAFVAT LLTLIPSLMP YLGIIFCTLC IYCSIGVQIF GGIVNAGNPE
601: LELTALAEND YLVFNFNDYP NGIVTLFNFL VTATWDEVMT SYKELTGTSW TYLYFISFYL ITVLLLLNLI IAFVLEAFFA EMELESSETC EGNDKEVEGD
701: KYRKRSIGTK TRSQRVDALL HHMLSAELCQ NESSSTQTS
001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT
Arabidopsis Description
TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.