CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19248

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03560.1	EES19248	AT1G51500.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011595_P007	Maize	plasma membrane	86.68	89.18
Os01t0678500-02	Rice	plasma membrane	85.89	85.2
TraesCS3D01G268800.1	Wheat	plasma membrane	84.02	85.04
TraesCS3B01G303100.1	Wheat	plasma membrane	83.75	84.77
TraesCS3A01G268700.1	Wheat	plasma membrane	83.49	84.5
GSMUA_Achr4P15270_001	Banana	plasma membrane	35.15	64.08
VIT_12s0028g03700.t01	Wine grape	cytosol, peroxisome, plasma membrane	30.49	62.57
KRH22384	Soybean	plasma membrane	59.92	60.98
KRH26949	Soybean	plasma membrane	59.92	60.89
Solyc07g053970.2.1	Tomato	nucleus	59.79	60.76
VIT_12s0028g03650.t01	Wine grape	plasma membrane	19.57	60.74
CDY61997	Canola	plasma membrane	56.99	59.78
AT4G03560.1	Thale cress	plasma membrane	58.06	59.48
CDY21975	Canola	plasma membrane	58.19	59.21
CDY48568	Canola	plasma membrane	56.59	59.11
Bra000820.1-P	Field mustard	plasma membrane	57.52	59.1
Bra034219.1-P	Field mustard	plasma membrane	56.59	58.95
CDY48215	Canola	plasma membrane	57.39	53.74
PGSC0003DMT400047241	Potato	extracellular	13.71	50.74

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.287.70	Gene3D:1.20.120.350	MapMan:24.3.2.1	EntrezGene:8061863	UniProt:C5XGP5
ProteinID:EES03434.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005245	GO:GO:0005261	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	GO:GO:0070588	GO:GO:0086010	GO:GO:0098655	InterPro:IPR002048
InterPro:IPR027359	InterPro:Ion_trans_dom	EnsemblPlants:KXG33111	ProteinID:KXG33111	ProteinID:KXG33111.1	PFAM:PF00520
PFAM:PF13499	PFscan:PS50222	PANTHER:PTHR10037	PANTHER:PTHR10037:SF231	SMART:SM00054	EnsemblPlantsGene:SORBI_3003G256100
SUPFAM:SSF47473	SUPFAM:SSF81324	unigene:Sbi.20223	TMHMM:TMhelix	InterPro:TPC1	UniParc:UPI0001A84B0F
InterPro:Volt_channel_dom_sf	RefSeq:XP_002458314.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:59423752..59439954

Molecular Weight (calculated)

86015.0 Da

IEP (calculated)

4.954

GRAVY (calculated)

0.302

Length

751 amino acids

Sequence
(BLAST)

001: MAEVEAPLIA EVEGEEGLGG FRGGSASAGG GRSGLGNGVR GARQYHRRSD ALAYGDRYQK AAALVDLAED GVGIPEDVLN DTRFERAMRF YFVYLRLDWL
101: WSLNLFALIL LNFLEKPLWC QKYATHTCDQ RDLYFLGQLP YLSKTESLIY EVLTLVILVL DIFYPLSYEG LNIFWKNSMN KLKVLLLFIL ACDILVFMLN
201: PGPFRVAPYI RVVFLIMTIR ELRMCAVTLV GIVGTYLNVL ALSLLFLLFA SWLAYVTFED TPQGKIIFTS YGTTLYQMFV LFTTSNNPDV WVPAYKSSRW
301: NALFIVIYVL LGVYFLTNLI LAVIYDSFKE QLAKQVAQMD SIRKSILQKA FDLIDTNGQG YLNKEQCISL LDELNKYRSL PKTSKEDFEL IFAELDRSGD
401: FKVTSEEFAD LCNTIAIKFQ KEPPPSYLEK YPSFYHSPQC EKLKSFVRSR LFEYIVVFVL LVNLIAVIIE TTLDIENSSS QKVWQEVEFV FGWIYVVEMA
501: LKIFSLGFGA YWMEGQNKFD FVLTWTIFIG ETLTFASPST LPFLSNGEWI RYLLLGRMLR LTRILLQVQR FRAFVATFFT LMSSLLPYLG IVFCILCVYC
601: SIGLQFFGGI VYAGNSKLEE TDLYGNDYLL FNFNDYPSGM VTLFNLLVMG NWQIWMESYA HLTGSSWSLV YFVSFYLISV LLLLNLIVAF VLEAFFAEME
701: LEKAGEADMQ DSTPEGRNKR RSMRVRTKGT MVDILLHHML SNELDGSQNS D

Best Arabidopsis Sequence Match ( AT4G03560.1 )
(BLAST)

001: MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS
101: CKDRDYYYLG ELPYLTNAES IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD FLPFRIAPYV RVIIFILSIR
201: ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI
301: LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ
401: KEEVPSLFEH FPQIYHSALS QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA LKIYTYGFEN YWREGANRFD
501: FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE
601: TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR
701: SAGSKSRSQR VDTLLHHMLG DELSKPECST SDT

Arabidopsis Description

TPC1AT4G03560 protein [Source:UniProtKB/TrEMBL;Acc:B9DFD5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.